Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1200 ATGGGTCTTCCTTCTGATTCTTCTTCCTCAGACCTCGAGCTTGTTCTAGGGCCTGGTTCCACTACTACTCCAAAGAAATTACCTTCCTTTAATGATAATCTCACTGTTACAGGTGGTGTTTGTGAGCCTTCTTTGACGTTGGCTCTCTCCGGCGACACTTACAAGATTGATGTGAATATCAAAGCTAATAATAATTGTGAGGAAACGCCTCTTGATCACTTGTCTCGCCAGACTTCTTCGCCTCACAGTGTGGTTTCGTCCTTCTCCGGTGGTGCTGGTGGGAGGGTGAAGAGGGAAAGAGATCTCAGCAGCGAGCTGGAGGCTGAGGCTGAGAGGGTTTCTTCCAGAGTCAGCGACGAAGATGAAGATGGAACTAATGCCAGGAAAAAGCTCAGGCTCACCAAAGAACAATCTGCTCTCCTCGAGGAAAGCTTCAAACAGCACAGCACTCTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGGCAGTTGAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTGAAGAAATGTTGTGAGACGCTGACGGATGAGAACAGGAGGCTGCAGAAAGAGCTGCTAGAGCTGAAGGCACTGAAGCTATCTCAGCCGTTGTACGTGCCGATGCCGGCTGCGACGCTCACCATGTGCCCTTCTTGCGAGAGGCTGGGCGGCGGCGTCGGGGACGGCGTCGGAGCTTCCAAGAAGACCCCATTCTCAATGACTCCCAAGTCCCCTCATCACCTACTGTACAACCCCTTCCACAACCCTTCCGCCGCATGTTGA 840 0.5179 MGLPSDSSSSDLELVLGPGSTTTPKKLPSFNDNLTVTGGVCEPSLTLALSGDTYKIDVNIKANNNCEETPLDHLSRQTSSPHSVVSSFSGGAGGRVKRERDLSSELEAEAERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELLELKALKLSQPLYVPMPAATLTMCPSCERLGGGVGDGVGASKKTPFSMTPKSPHHLLYNPFHNPSAAC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1200 279 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Lele56g1200 279 Coils Coil 190 217 - -
Lele56g1200 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 250 - -
Lele56g1200 279 SMART HOX_1 126 188 IPR001356 GO:0003677
Lele56g1200 279 MobiDBLite consensus disorder prediction 94 133 - -
Lele56g1200 279 CDD homeodomain 128 185 IPR001356 GO:0003677
Lele56g1200 279 MobiDBLite consensus disorder prediction 70 87 - -
Lele56g1200 279 Gene3D - 132 182 - -
Lele56g1200 279 MobiDBLite consensus disorder prediction 1 29 - -
Lele56g1200 279 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Lele56g1200 279 MobiDBLite consensus disorder prediction 70 133 - -
Lele56g1200 279 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Lele56g1200 279 Coils Coil 96 116 - -
Lele56g1200 279 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Lele56g1200 279 FunFam Homeobox-leucine zipper protein 18 113 189 - -
Lele56g1200 279 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Lele56g1200 279 SUPERFAMILY Homeodomain-like 118 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1200 Lele-ChrLele56 15444602 15445749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1200 1 279 Homeobox Transcription Factor Family AT4G37790 59.197 2.38e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele56g1200 Homeodomain 1.7e-16 CL0123