Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1189 ATGGAAATTGCCTCCGCCATGTACTCATCTGCCATGGACGATACCTCATTGTTTGAGCAGTTCCCCATGGATTTTTTCGATGGCCTTGATTTCCAATCCTTGGTCTCCGACAGTTATTCCTGTTATGAGCGTCCCAACTCCAACAGAAAACAGAATCCTCACTCTATGATTTCCCCACCAGCACCAGCACCAAGAGTACTCAAGACCAATAAGTCTGCTTCTGCTTCCAATTCTTTGTCCACAGTCATTTCTTTTGACCACTCCAATACGACGCACCAGTTTTCCAATGTGAAGCTCGAAACCGCGAATGAGAACCTTTTGAATTTTGCGTCTTTAAGCAGCCAAGGAGCATACTATGAAGACATCAATTTCGTACAACAAGCTCAGAAACTGACGAACGTGACGAGAAATCCAATCCAAGCTCAAGATCATGTCCTGTCCGAAAGAAGACGAAGGGAAAAGCTCAACCAGAAGTTCATTGCTCTCTCCTCCATCATTCCGGGTCTCAAGAAGATGGACAAGGCGTCAGTGTTGGGAGATGCTATAGAGTATGTAAAACAACTCAAGGAACGCGAGAAGATTCTGGAAGAGCAGGTCGCCATGAGAACAAAGGAATCTGCAGTCTTAACGAGAAAATCTATTCTCTTTGCCGACAATGATAACTCGCCGGCCGATGAAACTTCCGATCAGCCATTAGGGGAAATCGAAGCCAGAATTTTGGGTAAAGATGTGCTCATCAGAATCCAATGCGAGAAACAAAACGAGTGTGAGGCAAAAATACTGAGAGAATTACAAAACCTTCGTTTCAGTGTTCAAAGCAGTAGCATCTTGCCATTTGGCGAAACCTCACTATGTATAACTATCATAGCTCAGATGGACAAGAAGCACAGTATGACAGCAAAGGATTTCGTGGCAAGTTTGAGGAAGGCATTGACATTATTGGATCGTGCATAG 954 0.4423 MEIASAMYSSAMDDTSLFEQFPMDFFDGLDFQSLVSDSYSCYERPNSNRKQNPHSMISPPAPAPRVLKTNKSASASNSLSTVISFDHSNTTHQFSNVKLETANENLLNFASLSSQGAYYEDINFVQQAQKLTNVTRNPIQAQDHVLSERRRREKLNQKFIALSSIIPGLKKMDKASVLGDAIEYVKQLKEREKILEEQVAMRTKESAVLTRKSILFADNDNSPADETSDQPLGEIEARILGKDVLIRIQCEKQNECEAKILRELQNLRFSVQSSSILPFGETSLCITIIAQMDKKHSMTAKDFVASLRKALTLLDRA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1189 317 Coils Coil 185 205 - -
Lele56g1189 317 PANTHER BHLH TRANSCRIPTION FACTOR 11 311 - -
Lele56g1189 317 Gene3D - 135 200 IPR036638 GO:0046983
Lele56g1189 317 SMART finulus 145 194 IPR011598 GO:0046983
Lele56g1189 317 MobiDBLite consensus disorder prediction 42 71 - -
Lele56g1189 317 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Lele56g1189 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Lele56g1189 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1189 Lele-ChrLele56 15357304 15358465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1189 135 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.913 1.22e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g1189 HLH 2.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0431 50 2452972 2454245 Lele56g1189 56 15357304 15358465 CCT
Lele51g0412 51 2379193 2380656 Lele56g1189 56 15357304 15358465 CCT
Lele52g0429 52 2524146 2527913 Lele56g1189 56 15357304 15358465 CCT
Lele53g0243 53 2015061 2016371 Lele56g1189 56 15357304 15358465 hybridization
Lele54g0249 54 2091292 2092448 Lele56g1189 56 15357304 15358465 hybridization