Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1188 ATGGACCCATCTGCAGCCAGCTCGTTTTCTGATTTGGAAATGGATGATTACGATTTGTTTCCTATGCAGTGCCACCTGATAGATGATGATCAGTTTATTTCACAGGACATAGCCAGTGTTCTTCAGGGACAATCGTATTTGCAGCCATCTTTGTCTTGTGAGAGCTATTCTTCGTATAATTCATGCACTGCTGAAACTAGCCTTGATGGGGCTTCCTTGAAGTTCAAAACCACCATTTCTGAACCTTCATCTTCTTCTTCTCAACTTCTGTCTTTTGATAACTCTAATTATAACACTACTTCTTCCCCTACCAATAGCACCAACCTCTTTAACGTTTTTGACTCAACGACCTTGAAGCCACACAAGGATCATATACAGTATTTCTCAGCTCAATCCCCTAATGGCGGATTTTCCCAAAATCACAACTTTGAACCCAATTCCACACAAAGCATCAATAAGCCTATCCCTCACGTCCGTGATCACATCATGGCTGAGAGAAAACGAAGAGAAAAGCTCAGCCAGAGCTTCATTGCTCTTTCAGCTCTTGTCCCAGGCCTCAAAAAGATGGACAAGAATTCGGTGCTTGGGGACGCTATCAAGTACGTGAAGGAGCTGAAGGAGAGACTGAAGTTGTTGGAAGAACAAAAACAGAAAAGAAAAAGGGTTGAATCAATGGTTGGAGTGAAGAAAACGAAACTGTACGAGGATGATGATGAAGAAGAAGGAGTTGCTCAAGTGGAAGCAAGAGTGTTTGAGAAGGACGTGCTGGTTCGGATCCACTGCCAGAAACAGAAGGGACTTCTGGTGAAAATACTCTCAGAGATTCAGAATCTTCATCTTTTTGTTGTCAACAGCAGCGTTTTGCCATTCGGGGACTCCAATCTTGTCGTCACCATTGTTGCTCAGATGGGGGAAAATTGCAGCTTGACGATGAGTGTTTATGATCTGCAATTTATATCATTCCGTGACTTTGATTTTTTAATAGTTGAAACAGATATCACAAACCAATGGAATCGATGGAGGAATCATGGGAAAGCTTTTTCCAGGATTTGTTTTGCTTTTGGTGGGGCTCCTGATGAATTAGGTATTGCATCGCCACAGGAGAACTTTGAAAGTTGCTGGAATAACACAGATACCTTGAACGCTGAAAATGGCATCATCATCCCGAGCATTAATCCTTCAACTTCATCAAATTCTGTCAACACCCAACATCTCACGTTTTCCCATGATTCTGTCTTGATGGTACAAGACAAGGCTTATTTTGATGATCCTTCAAATGGGTACTTGCAGAGTCAAACAAATAGTATTAAAGAAAAAGACAAACCAGAGGGTAGAAATTCTCGAGTAAAAGAGCACTTACTTGCTGAGAGAATGAGGAGAGGAAGGATCTCCCAGCACTTCATTGCCCTTTCTGCCCTAATTCCTGGCCTCAAAAGGGCGGACAAAGCGTCTTTGCTGGAGGGAGCTATAAAACACGTGAAGCAGCTTCAAGAACAAGTGAAAACACTGGAAGAAGAACAGACCAATAAGAAGAAGAAGACTGGAGAATCTGTGGTGTTTGTGAAGAAGTCTCAACTGATATCTAACACGGACACGACGTCGTTTAATGATCCCTCAAAATTTAATGCAAGACTAGCAGAAGCAGATGTTGAAGCAAGGGTTTCAGACAAAAACGTGTTGATTCGAGTGCAATGCAAGAAACAAGAAGGAATAATGGTGAAGACGATCAAGGAGATAGAAAAACTCCACTTGTCTGTGGTAAATAGCAGTGTGATGCCATTTGGGAGATCCATTCTCGACATCACCATCATAGCTGAGGTGGAGGACGAATTCAACTTGAGCGAGAACGAGCTGGCTAGAAATCTCAAGGTGGCACTCTTGCAATCAATGTAA 1893 0.4231 MDPSAASSFSDLEMDDYDLFPMQCHLIDDDQFISQDIASVLQGQSYLQPSLSCESYSSYNSCTAETSLDGASLKFKTTISEPSSSSSQLLSFDNSNYNTTSSPTNSTNLFNVFDSTTLKPHKDHIQYFSAQSPNGGFSQNHNFEPNSTQSINKPIPHVRDHIMAERKRREKLSQSFIALSALVPGLKKMDKNSVLGDAIKYVKELKERLKLLEEQKQKRKRVESMVGVKKTKLYEDDDEEEGVAQVEARVFEKDVLVRIHCQKQKGLLVKILSEIQNLHLFVVNSSVLPFGDSNLVVTIVAQMGENCSLTMSVYDLQFISFRDFDFLIVETDITNQWNRWRNHGKAFSRICFAFGGAPDELGIASPQENFESCWNNTDTLNAENGIIIPSINPSTSSNSVNTQHLTFSHDSVLMVQDKAYFDDPSNGYLQSQTNSIKEKDKPEGRNSRVKEHLLAERMRRGRISQHFIALSALIPGLKRADKASLLEGAIKHVKQLQEQVKTLEEEQTNKKKKTGESVVFVKKSQLISNTDTTSFNDPSKFNARLAEADVEARVSDKNVLIRVQCKKQEGIMVKTIKEIEKLHLSVVNSSVMPFGRSILDITIIAEVEDEFNLSENELARNLKVALLQSM 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1188 630 Gene3D - 444 518 IPR036638 GO:0046983
Lele56g1188 630 SMART finulus 453 502 IPR011598 GO:0046983
Lele56g1188 630 SMART finulus 162 211 IPR011598 GO:0046983
Lele56g1188 630 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Lele56g1188 630 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 448 510 IPR036638 GO:0046983
Lele56g1188 630 Pfam Helix-loop-helix DNA-binding domain 450 497 IPR011598 GO:0046983
Lele56g1188 630 Pfam Helix-loop-helix DNA-binding domain 161 205 IPR011598 GO:0046983
Lele56g1188 630 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Lele56g1188 630 Coils Coil 486 513 - -
Lele56g1188 630 Gene3D - 157 222 IPR036638 GO:0046983
Lele56g1188 630 PANTHER BHLH TRANSCRIPTION FACTOR 48 312 - -
Lele56g1188 630 MobiDBLite consensus disorder prediction 428 447 - -
Lele56g1188 630 Coils Coil 195 222 - -
Lele56g1188 630 CDD bHLH_AtNAI1_like 157 230 - -
Lele56g1188 630 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 447 496 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1188 Lele-ChrLele56 15336524 15341891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1188 438 626 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.550 1.45e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g1188 HLH 1.5e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0403 49 2338478 2339860 Lele56g1188 56 15336524 15341891 CCT
Lele53g0246 53 2041857 2043369 Lele56g1188 56 15336524 15341891 hybridization
Lele54g0250 54 2103808 2105318 Lele56g1188 56 15336524 15341891 hybridization