Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1181 ATGGATTCACGGGAACCGCCTCAGCCCCCTCACCCTTCGCAACTACAGTCGATGGCACAAGCACAACCACCGTCGACGATGCCAAGCATGATGATGGGAATTACTTCGTATGGTTCTGCCATGTCGAACCCGAACACGTCTCCCATGATCAGCCCCAATTCGACTGCCGCGATGATGGCCCCTGCCACCGCCGCACGATTCCCTTTCAACACCGTGGTTCCACAACCCCCTGCCCCGTCTAAACCTATGGAACATCTGAACAACAATGTTAGTCCTTTCGATGGGTCATCGTCCTCGATGAGGCCATGTGGTTTGATTACTGATCCTACGAAGAAAAAGAGAGGCCGGCCAAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGTCTCCCACGCCCATGTCTTCTTCTGCTGGTCAAGGAGATTCGAGTGGTACACCTTCGACGGAACCTGGAACGAAGAAGCACAGGGGAAGGCCACCGGGTTCTGGAAAGAAACAGCTGGATGCTCTTGGAGCTGGCGGTATTGGTTTTACTCCGCACGTAATATTGGTAAAAGCTGGTGAGGACATTGCTGGCAAGATTGTGGCCTTTTCACAGCAAGGGCCTAGGACAGTTTGTATTCTTTCTGCAATTGGCGCAATCAGCAATGTTACCCTTAGACAGGCAGCAATTTCTGGCGGCACTGTGCAATATGAGGAATACTGTCTCTTGAGTTTATTCAGCCCTGTGGTGCAAAGTTGTTGCCGAATTGGAATTGGATGTCAAACAAGATTATCTGATGCCATAGACATTTGGGTCTTTTGATGCCAATTCCCTTTACAGGGCCGATTTGAGATAATATCTCTATCAGGTTCTTTCCTGCCATGTGATGATAATGGTCGTAACAGAGCAGGTGGTTTTACTGTGTCTCTTGCGGGGTCAGATGGTAAAGTTTTAGGGGGCGGAGTTGCTGGAATGCTAATCGCTGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTGCTGATGGGAAAAAGTCAAGCTCAAGTATTCTGAAATCAGGGGCTTCCCAAACGTTAAATTTTGGTGCACCCACTACTTCTACTAGCCCTACCTCTCAACCTTCATCTGAGTCCTCTGAAGAGAATGACAATAATGGTGATTTTAATAGGGGACCTGCACTCTACAATAATAATAATACTAGCCAGCCGCCCATTCACAATATGCAGCAGATGTATCATCCTCAACTATGGGCTGGTCAAACCCAGCAGTGA 1260 0.4857 MDSREPPQPPHPSQLQSMAQAQPPSTMPSMMMGITSYGSAMSNPNTSPMISPNSTAAMMAPATAARFPFNTVVPQPPAPSKPMEHLNNNVSPFDGSSSSMRPCGLITDPTKKKRGRPRKYSPDGNIALGLSPTPMSSSAGQGDSSGTPSTEPGTKKHRGRPPGSGKKQLDALGAGGIGFTPHVILVKAGEDIAGKIVAFSQQGPRTVCILSAIGAISNVTLRQAAISGGTVQYEEYCLLSLFSPVVQSCCRIGIGCQTRLSDAIDIWVFXCQFPLQGRFEIISLSGSFLPCDDNGRNRAGGFTVSLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIADGKKSSSSILKSGASQTLNFGAPTTSTSPTSQPSSESSEENDNNGDFNRGPALYNNNNTSQPPIHNMQQMYHPQLWAGQTQQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1181 419 MobiDBLite consensus disorder prediction 355 419 - -
Lele56g1181 419 MobiDBLite consensus disorder prediction 130 152 - -
Lele56g1181 419 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 379 IPR039605 GO:0003680
Lele56g1181 419 MobiDBLite consensus disorder prediction 71 173 - -
Lele56g1181 419 MobiDBLite consensus disorder prediction 14 39 - -
Lele56g1181 419 Gene3D - 181 348 - -
Lele56g1181 419 SMART AT_hook_2 111 123 IPR017956 GO:0003677
Lele56g1181 419 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Lele56g1181 419 MobiDBLite consensus disorder prediction 82 104 - -
Lele56g1181 419 CDD DUF296 180 335 IPR005175 -
Lele56g1181 419 MobiDBLite consensus disorder prediction 1 39 - -
Lele56g1181 419 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 336 - -
Lele56g1181 419 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 335 IPR005175 -
Lele56g1181 419 ProSiteProfiles PPC domain profile profile. 175 356 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1181 Lele-ChrLele56 15263250 15268502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1181 74 341 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 47.794 1.18e-63 206