Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1178 ATGGGGTTAGAACGCGGAGAAAACCCAATAAAACTACACAGCTTTGGTGGTCCCGCTGATCTTGCATGCATTTTAAGCTTATCTATGGCCCTTGTTTTTAGTTCTTTGTATCATAATGTTTTCTTCATTCACGAAAGTTGCTGGTGCTGTTCCTTCTACCCATACCTCATAAGGACTTTTCTTAGTGGTTTGCTCTTCTTGCTTGGTTTTGTGGATTCTACATCCACAGCACACAGAATGGTGAGAAGAGGTTTTTCAGACGACCCTGATTTCCCTGTAGAAGCAACGTGGCTCATTCTTTACCATCAAAACTCCATAAGAGAAAAGGCAGTGAAGCTAGTTTTTGCATCACTCAGTGCATGCACTGTATTGTGCACCTATGTTCCACTTGCCCCTTACCCTACACCTCCAGCTCCATATACGCCTCCAGCTAATGGTACACAGCAACAGAGTCAGCTTGTGTGTTGTGGGTGTAGAAACCTTCTTCTCTATCCAGTTGGAGCAACATCTGTGTGCTGTGCTGTTTGCAATGCAGTCACTGCAGTGCCACCTCCTGGCACAGAAATGGCGCAGTTGGTTTGTGGAGCCTGCCACACCTTACTGATGTACATACGTGGGGCGACAAGCGTGCAATGTTCCTGCTGTCACATTGTGAATCTAGCCTTAGAAGCAAATCAAGTGGCACATGTCAATTGTGGTAACTGTAGGATGCTACTGATGTACCAATATGGAGCAATATCTGTTAAATGTGCAGTCTGCAATTTTGTAACATCTGTTGGGGCCCCAGGAAGCACAATTGAGCAGAAGTTCAGCGCCTAA 819 0.4542 MGLERGENPIKLHSFGGPADLACILSLSMALVFSSLYHNVFFIHESCWCCSFYPYLIRTFLSGLLFLLGFVDSTSTAHRMVRRGFSDDPDFPVEATWLILYHQNSIREKAVKLVFASLSACTVLCTYVPLAPYPTPPAPYTPPANGTQQQSQLVCCGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHIVNLALEANQVAHVNCGNCRMLLMYQYGAISVKCAVCNFVTSVGAPGSTIEQKFSA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1178 272 PANTHER PROTEIN LSD1 137 182 IPR040319 -
Lele56g1178 272 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 229 259 IPR005735 -
Lele56g1178 272 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 191 220 IPR005735 -
Lele56g1178 272 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 152 182 IPR005735 -
Lele56g1178 272 Pfam LSD1 zinc finger 232 256 IPR005735 -
Lele56g1178 272 Pfam LSD1 zinc finger 194 218 IPR005735 -
Lele56g1178 272 Pfam LSD1 zinc finger 155 179 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1178 Lele-ChrLele56 15233348 15236572 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele56g1178 zf-LSD1 3.6e-08 No_clan