Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1177 ATGGCCGAGAAGTCCAGAAGACCTGATGAAGAGTTGAAAGTGCTTGACAAAAACACCATCCATCAAAATTTGGATGTGTACATATGGGACATGGATGAGACCCTTATACTGCTGAACTCTTTGCTGAAGGAGTCCTATGCAGAGGCTTTTAATGGCTTGAAGGATGTCCAGAAGGGTGTGGAGATTGGGAGGATGTGGGAAAAGCTCATCCTGCAATTATGTGATGGTTATTTCTTCTATGAGCAAATTGAAAATTACAATAAGCCATTTCTTGATATTTTGAGCCAATATGATGATGGAAGGGACCTCTCTGATTATGACTTCAACCAAGATGGTTTGGGTTCTTCCCATGATGATGATGACAACAAAAGAAAGATTGCATATAGGCATCGAGTTATAGCCCAAAAGTACATATTGGGTTTAAAGAATCTTTTGGACCAAGAGACAGTTAAACTCTGGGATCAATTGTATGAGACAACTGATGCATATACTGATAGATGGCTTTCCTCAGCACGGGCATTTCTGAAGGAGTGTTTGGGAGACAATAAGGATGCAGATTCCTCTGTTGCGCCTCCTGAGACCAGTGCTGACTCAACCAATATGACACGCCTGCGTGTTAACGTTTTAGTGACATCTGGATCGCTGATACCAACCCTTGTAAAATGCATGCTCTTTCGTATTGACAGCCTGATAACTCATGAAAATATTTATAGCTCATGGGACGTGGGGAAAGTTCAGTGCTTCGGATGGATCAAGGAGCGTTTCGACCATCCCAATGTCCGTTTTTGTGTGATTGGAGATGGATGGGAAGAGTGTGAAGCGGCAAAAATCATGAGATGGCCATTTGTTAAGATTGATCCACGGCCAGGCACACCCTACAGATTTCCTGGGCTCACATTGAGAACAGTGAGCCACTACTTTTCTGTGGTGTATGGAAGTCTGAATAATGAGAACGATGGTGACCAATAA 969 0.4283 MAEKSRRPDEELKVLDKNTIHQNLDVYIWDMDETLILLNSLLKESYAEAFNGLKDVQKGVEIGRMWEKLILQLCDGYFFYEQIENYNKPFLDILSQYDDGRDLSDYDFNQDGLGSSHDDDDNKRKIAYRHRVIAQKYILGLKNLLDQETVKLWDQLYETTDAYTDRWLSSARAFLKECLGDNKDADSSVAPPETSADSTNMTRLRVNVLVTSGSLIPTLVKCMLFRIDSLITHENIYSSWDVGKVQCFGWIKERFDHPNVRFCVIGDGWEECEAAKIMRWPFVKIDPRPGTPYRFPGLTLRTVSHYFSVVYGSLNNENDGDQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1177 322 PANTHER EYES ABSENT 21 307 IPR028472 GO:0004725
Lele56g1177 322 SFLD Haloacid Dehalogenase 25 286 - -
Lele56g1177 322 TIGRFAM EYA-cons_domain: EYA conserved domain 25 303 IPR006545 GO:0007275
Lele56g1177 322 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 25 286 - -
Lele56g1177 322 FunFam Eyes absent homolog 25 295 - -
Lele56g1177 322 Gene3D - 25 291 IPR038102 -
Lele56g1177 322 SUPERFAMILY HAD-like 23 293 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1177 Lele-ChrLele56 15228691 15230359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1177 24 313 Protein tyrosine phosphatase (PTP) family AT2G35320 60.345 3.69e-132 377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0256 53 2125729 2127389 Lele56g1177 56 15228691 15230359 hybridization
Lele54g0260 54 2200223 2201923 Lele56g1177 56 15228691 15230359 hybridization