Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1174 ATGTTGCCACGCGTCTTATGGCAGGTCAAGTGGAGGGAGGAGTTGAAGTCTAAAGAGGAAGCCTTAGGATTAGTTGAGGAGGAGCGACGTGCTAAAGAAGCAGCGGAGGCTAATAATAAGCGGAAGCTTGAAGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTACTAAGACTTGAGCAGGTGCTCTCACGCTTAAAAGCATCTGTTCAGTCTGCTGAGTTTCAAAATCAATCAAGTACTTCACCTGCAAGTGAGTCTGACGGTGCAGAGCCTCAAAGAGAGACAATTGCAAAGATGCTTCAAGAGTTAGATAAACTGAAGGCATTTTCAGATAAAAAAGTAAACTGTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTTTGTGTGCTAGTTGCAGTGATGAGTATGGGCTGAGAAAGGGCAAAGCTGCATGTCCTTGCTGTCATGTTCCAATCGAGCAGAGGATTCGCGTATTTGGGGCAAGTTCGTAG 546 0.4469 MLPRVLWQVKWREELKSKEEALGLVEEERRAKEAAEANNKRKLEALRLKIEIDFQRHKDDLLRLEQVLSRLKASVQSAEFQNQSSTSPASESDGAEPQRETIAKMLQELDKLKAFSDKKVNCDRECIICMKDEVSVVFLPCAHQVLCASCSDEYGLRKGKAACPCCHVPIEQRIRVFGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1174 181 PIRSF SBP1_RNase_bind 8 64 IPR017066 -
Lele56g1174 181 PIRSF SBP1_RNase_bind 62 178 IPR017066 -
Lele56g1174 181 PANTHER OS05G0141500 PROTEIN 8 176 IPR046934 -
Lele56g1174 181 SMART ring_2 126 166 IPR001841 -
Lele56g1174 181 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Lele56g1174 181 Coils Coil 18 45 - -
Lele56g1174 181 Coils Coil 54 81 - -
Lele56g1174 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 178 IPR013083 -
Lele56g1174 181 Pfam Zinc finger, C3HC4 type (RING finger) 123 172 - -
Lele56g1174 181 SUPERFAMILY RING/U-box 114 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1174 Lele-ChrLele56 15207853 15208398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1174 126 177 C3H Transcription Factor Family AT1G73950 44.231 2.29e-07 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0446 50 2560880 2563009 Lele56g1174 56 15207853 15208398 CCT
Lele51g0428 51 2468466 2470590 Lele56g1174 56 15207853 15208398 CCT
Lele52g0444 52 2627610 2629712 Lele56g1174 56 15207853 15208398 CCT
Lele49g0416 49 2415567 2418667 Lele56g1174 56 15207853 15208398 CCT
Lele53g0258 53 2144646 2149042 Lele56g1174 56 15207853 15208398 hybridization
Lele54g0262 54 2214082 2218513 Lele56g1174 56 15207853 15208398 hybridization