Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1171 ATGGGAAGTGCACCATTACCACCAGGTTTTCGTTTCCATCCAACAGATGAAGAACTGGTCGGATATTATCTAAAGAGAAAAGTAGAGGGGCTTGAAATAGAGCTTGAGGTTATCCCAGTCATTGACTTGTACAAATTTGATCCATGGGAATTGCCAGGTTATAGAAAGACACTTGTTTTCTATCGCGGAAGAGCTCCACTTGGAGATCGAACCGAGTGGATAATGTATGAGTATCGACTCAACAATGACTCTGATCTCTCATCATCACCTAGTTTCCAGGGTGGTTTTGCATTGTGCAGAGTGATGAAGAAGAATGAGAAAGCGAAGAGTTTGCAGGAAGAACAAAAGGGTAAGGCAGCAGGAAGTAGCTGCACCAGTGGGAATGAAGAGGCTTCAATGAAGACTTCTCCGTACCATGTGGCTCCAACAATGGCAGAGCCAGAGCAAGCTTCTTCCTTGAAGTCAATCAACCCTTCACATTTTGATGTCTCTCCTGAATTGATTCTAGATTCTTCCAAGGACTACTCTCAAGTACAAGATGCGATGTCTGGATCCTTTCCACTGTACGACTTATCATGCTCAATTAATCCATGGCAACCATTCCTAACAACAGAAAAATCAACCTCTTCTTCTTACTCAAATGTAAATGGAGAGCTTGAATTGGTTGAAGATCTCAATCAATTTGGCTACTTGTATGGAAATGAGCATGTGTCTCATGAAGGCTCTGATCAAATCAATTCATTCAGATATCCAAAACCCTTCTGA 765 0.4196 MGSAPLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPGYRKTLVFYRGRAPLGDRTEWIMYEYRLNNDSDLSSSPSFQGGFALCRVMKKNEKAKSLQEEQKGKAAGSSCTSGNEEASMKTSPYHVAPTMAEPEQASSLKSINPSHFDVSPELILDSSKDYSQVQDAMSGSFPLYDLSCSINPWQPFLTTEKSTSSSYSNVNGELELVEDLNQFGYLYGNEHVSHEGSDQINSFRYPKPF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1171 254 MobiDBLite consensus disorder prediction 109 133 - -
Lele56g1171 254 Gene3D NAC domain 15 53 IPR036093 GO:0003677|GO:0006355
Lele56g1171 254 MobiDBLite consensus disorder prediction 116 133 - -
Lele56g1171 254 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 53 - -
Lele56g1171 254 SUPERFAMILY NAC domain 3 104 IPR036093 GO:0003677|GO:0006355
Lele56g1171 254 Gene3D NAC domain 54 110 IPR036093 GO:0003677|GO:0006355
Lele56g1171 254 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Lele56g1171 254 Pfam No apical meristem (NAM) protein 7 54 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1171 Lele-ChrLele56 15186893 15188109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1171 1 254 NAC Transcription Factor Family AT4G17980 38.365 6.76e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele56g1171 NAM 1.3e-13 No_clan