Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1170 ATGGGTGAGATTGTGGAGGAGTTGAATCCCCTTGTTGGAGGTAACGATGGGCATGAATTCGATAATATTAGTAAGGTTCGTGATTTGAGAGGATTAATTGCCAGCAATGGTCGTTTACCGATTGATAATTTGAGTCTTATTCTGCGCGGAAATGTATTATGTGATATGAAAAATGGAGATGACGTGTACATTCAACTCAATGATGGAGATTCTCTGATTGTTGCTGTCAAACCAAAGCCACCAGTTTGTGATGGATATGATGACGACGATGACAATGATGATGTGTTTAAGCTTCCCCGTTCATCAAGTTGGTGGAAGAAGAGGCTTTACTCTTTTCTGCATGATAACTTGAAGCTTCCAGATATCCTTTTGATGTTTATATTCTCTCTGAGCTTGAAAGCATGGGCTCTCACATTTATGTGGTTTATCCTGGCACCCCTTGCCCATAAATGGCATCTCGGACCCCTATATATACTTGCTACAGGTTTTTGTCTAATTCTCTTTAATCTTGGAAAGCGCCAAGCTGGTGACGTCAGTGCATATTCTATCTTCAATGAAGATTTTAGAGAGCTTCCAGGGACCCTTAATGCAGATCGGCTTGATAGGGATGTAAACCTGACGGCAACGACGAACCAACATGACCGGCAGCAGTACGGGATTTCTGCCCCGACTGAGCATTTGGACGGAACTCTAGGCCACTCCTTCCGATATGTCAGATCTTCACCTCGGTTGATTTCACTCACTCACTCAGATCGCTTTGGCTCTCCTCCTTCTAACTTCCTCCGCTTCTCTCCCACCCGCGAGCCCATTATTACAGCCCGACCGGATTATCCGGAAACTGGGTTCAGGGCCATTTCCGGATCTTCGGTGAGTGCCAACAATTTGACTCCAAAACCTGTTCTCGAGATGGAAGATATCCACGATGGAGCCAATGATGATACAGCTCCTGAAGGTGGCGTGAGGGGAAGTAATGTGAATGGGTTCGAAAGCATATCTTCGTTTAGAGCTCTTCCGCTTCAGCCGGCACCGAGAGGGGAAGCTCACTTTCTCTCTGGTCCAATTGAGCGTAGTGCCCGCTCTGGGCCTCTCGAGGCAAACGACGCCGCCACAGAAAGTGGAAGCGAGGTCCCTTTTTCAGCTCGTCTGGGGGGCTTTTATACCAAAAAGAAGCGGAAGAGCGTGTTTTCACGGTTGCGTAAGGCATTTCATCGGGCCATTTCGGAGAAGAAGCAGCCAGGGGTGGCGCCGGTGTCGAATGTCGTGGGCAGAAAGGAAGTTCCGTCGAACGAAGATAAGCCGGAGATGAAAAGTGAGAGCCATGTACAGTGGGCGCTTGGGAAAGCAGGAGAGGATCGGGTACACGTGGTTGTATCGGAAGAACACGGCTGGCTCTTCGTCGGGATTTACGACGGCTTCAATGGCCCTGACGCGCCGGAATTCCTAATGTGCCATCTTTATCTTGCTGTTGACAATGAACTAAAAGGTTCGTTCTGGGAAGAAGTTGAAGAAGACACAGAGGAAACTGAAACTGAAACCTTAATGGGAAGAAAGTCCCCGGAAGAGATCAAAACAGAGGGTGAAATTTCAGTATGTTTAGAAGATACGAATCCTCAGATGTTTCAATCTGAAGGAACTAAAAGTAGGCGACGCAGGCTATGGGAATTTCTTGCAGAGGAAGACGATCGTGCAGATGGTATTGATCTTTCATGCTCAGAAAGATTTGAATTTTCCGTCCATGAAGAAATCAACGCAGGATCAGCAGTTAGTAGACGGTGGCTATTACCAAAACATAAGAGGGTCCACGGTGGTGTTGTTTTGATTAGGGAAGAGGATGTTTACGTGATGAACGTGGGAGATAGCAGAGCCATTATTGCACAATACAAGCCCAAAGGACTGGAATCTAAAGAGAGCATAGTTGAGGAATTCTTAGATAAAGATGAAAGCGCAATCAAGTTGGAGAATGAGGATTCTGGTCAAGAAATGAGGTTAGCTGCATTGCAGCTTTCCACCGACCATAGTACCAGCATTGAAGAGGTACGCTGCGAAGTGATAAGATTTAAGAACGACCATCCTGATGATAGCCACTGCATTGTGAATGGTAGAGTGAAAGGTCATCTTCAGGTGACCAGAGCATTTGGGGCTGGATTTTTGAAACAGCTTATTTTTGATCCTGTTGCACATGTCCATGTGTTCTGCTTATTTGGCGTTTCTCTTGTTTGTGACTACGTAATTTCATATGAATTTTATTTATACTTACTTGATGGTATAATTTGCATGGTGATGCAGCCAAAGTTGAATGATGCAGTGCTGGAAATGTTTCGTAATGATTATATAGGCACTGGTCCATATATTTCCTGCTCTCCTTCACTCTACCATCACAGATTAAGCCACAGAGATGATCAATTCTTGATCCTCTCATCTGATGGCTTATATCAATATTTAACTAATCAAGAAGTGGTGTCTCAAGTTAAGAACTTTATGGACAAGTTCCCAGATGGAGATCCTGCCCAACATTTAATAGAGCAGCTACTTCTCCGTGCGGCCACCAAAGCTGGAATGGATGTGCACGAGTTCCTCGAGATTCCTAAAGGAGATAGAAGTAAGTACCATGATGATGTAACTGTCCTGGTCATCTCACTTGAAGGAAGAATATGGAAATCAACGGGGCAAGCTACACAATCAAATCTTTCAAGTTTGGGGCTTTTAATCCTCAAGGCTACTGAAGCACTGACGATCACTGATACTTTTGATGCGTTGTTGTTTTATTGGCCTGAAACTGATCATGATACTCAAACTCAAACCCGAGAACCCATTGTTTTGCCCAAGGGTGGTTTTGCAGGACCCGATACAAACTCTGGCATTGTTGACCTAAGGCAAGCCAAGTCTAGATTGGGATTGTCTTATGCTAAGAGGGAAGACAGCAAAGAATCTCTCTTTGGGACGAGTCCAAGGCTACACTTGAAGAAGTTGAGGCTTTTTGCCGCCCGCAAATGCTAG 2997 0.4515 MGEIVEELNPLVGGNDGHEFDNISKVRDLRGLIASNGRLPIDNLSLILRGNVLCDMKNGDDVYIQLNDGDSLIVAVKPKPPVCDGYDDDDDNDDVFKLPRSSSWWKKRLYSFLHDNLKLPDILLMFIFSLSLKAWALTFMWFILAPLAHKWHLGPLYILATGFCLILFNLGKRQAGDVSAYSIFNEDFRELPGTLNADRLDRDVNLTATTNQHDRQQYGISAPTEHLDGTLGHSFRYVRSSPRLISLTHSDRFGSPPSNFLRFSPTREPIITARPDYPETGFRAISGSSVSANNLTPKPVLEMEDIHDGANDDTAPEGGVRGSNVNGFESISSFRALPLQPAPRGEAHFLSGPIERSARSGPLEANDAATESGSEVPFSARLGGFYTKKKRKSVFSRLRKAFHRAISEKKQPGVAPVSNVVGRKEVPSNEDKPEMKSESHVQWALGKAGEDRVHVVVSEEHGWLFVGIYDGFNGPDAPEFLMCHLYLAVDNELKGSFWEEVEEDTEETETETLMGRKSPEEIKTEGEISVCLEDTNPQMFQSEGTKSRRRRLWEFLAEEDDRADGIDLSCSERFEFSVHEEINAGSAVSRRWLLPKHKRVHGGVVLIREEDVYVMNVGDSRAIIAQYKPKGLESKESIVEEFLDKDESAIKLENEDSGQEMRLAALQLSTDHSTSIEEVRCEVIRFKNDHPDDSHCIVNGRVKGHLQVTRAFGAGFLKQLIFDPVAHVHVFCLFGVSLVCDYVISYEFYLYLLDGIICMVMQPKLNDAVLEMFRNDYIGTGPYISCSPSLYHHRLSHRDDQFLILSSDGLYQYLTNQEVVSQVKNFMDKFPDGDPAQHLIEQLLLRAATKAGMDVHEFLEIPKGDRSKYHDDVTVLVISLEGRIWKSTGQATQSNLSSLGLLILKATEALTITDTFDALLFYWPETDHDTQTQTREPIVLPKGGFAGPDTNSGIVDLRQAKSRLGLSYAKREDSKESLFGTSPRLHLKKLRLFAARKC 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1170 998 Pfam Protein phosphatase 2C 602 841 IPR001932 -
Lele56g1170 998 Gene3D - 418 890 IPR036457 -
Lele56g1170 998 PANTHER UNCHARACTERIZED 19 206 IPR039159 -
Lele56g1170 998 CDD PP2Cc 447 880 IPR001932 -
Lele56g1170 998 ProSiteProfiles PPM-type phosphatase domain profile. 435 880 IPR001932 -
Lele56g1170 998 SMART PP2C_4 434 878 IPR001932 -
Lele56g1170 998 SUPERFAMILY PP2C-like 446 881 IPR036457 -
Lele56g1170 998 Pfam Uncharacterized conserved domain (SAYSvFN) 138 203 IPR019387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1170 Lele-ChrLele56 15172523 15185089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1170 206 887 PP2C-type Phosphatase Gene Family AT2G28890 37.584 2.76e-129 404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g1170 56 15172523 15185089 Lele49g0416 49 2415567 2418667 CCT
Lele56g1170 56 15172523 15185089 Lele50g0445 50 2545717 2548717 CCT
Lele56g1170 56 15172523 15185089 Lele51g0427 51 2462470 2467478 CCT
Lele56g1170 56 15172523 15185089 Lele52g0443 52 2622005 2625353 CCT
Lele53g0264 53 2180479 2184092 Lele56g1170 56 15172523 15185089 hybridization
Lele54g0267 54 2251463 2254345 Lele56g1170 56 15172523 15185089 hybridization