Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1162 ATGATCCTTGACTTCTATAGGCGACAGAGGAACGATGCTAAACCAGCTATGGTTTGCACTGCTAACGATATACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACAGCAGTTCTGCTTCGGAGATAAGAACAAAGCTTGAGGCCATGGACTATATCGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCCACCAAACCTGAAGGCTTCCACGTTGCCATAGTGGAGGTTAGTACCAGCAGCCCGGGAAGTTTCAAAATTCTTGAGTATGCTAAATATTTGCCCACCATCATGACTTCAAACAATCACTGCTTGAGCTCCATGATGAAGTGTGTAGCGCTTGGTGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGTAATATCTGGCAGCATGTTGTTCACAAGGCATTCAACACTAGGACAAGTGTCCTGCCTAAATCACTAGAACCTGTCAAAGAATCTGAGGTATTGCAGCTTCAAACAGACGGTAGAGAGCATGGAAGTGTAAATTTAGAGGAGTCTAGGTTCAGTGATGATGACCATGAGCAGTCTATAGGAAGTGACAAGTACCCAGCGCCTTCGACTCCACAATTAAAACAGGGGGCAAGGTTAATGGACGATGGAGATTGCCAAGAACAGACGAATTGTTCAACAGAAAAGGAAAGTGAAGACCATGATGGGGAATCTACATTTGTCGAAACTACTCGTGGGGTTTTGAATGCTGAAGGTATTCTGCAACCATTAAAACCTGAAAAGGCTCTGAAGAACATGGAACATGAGAGCCTTGCAAATGATTCTAAGAGTGAGAAATTTCTCTCTCCACCTGTAAATGATGGTGTTCTCAGCAACATTGAAGGTGATATTGTATTTCCAAATAAAGCAGGTGTTCATAGTGATTCCCGTCAAATCAAAACTAAGAAGAAGGTAGACTGGACACCTCAGCTGCACAAAAAGTTTGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCCATTCCTTCTCGGATACTGGAGATGATGAATGTGGAGGGATTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAAAATGCATAGGAGGCAAATCTTGCCAAAGGAAGATCGAAGATGGGTACAACAAACTCCAGTTATGGCTTTCCCTCCATATTATTCTAACTGCAACCCATCACCAGCTCCTGTGTATCCTTTCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATGCTTGGGACCCACCTGGTTATCCCCTGTGGCATCCTGCTGAAAGTCGGCACTGGAAGCCATATGATAGGATACATGCAGATGCATGGGGTTTCCCAGTGTTACCAGCTCCTCAAAGTCCTTGTATTTCGTACTCTCAAAATATACCTGGATGGCACAATGCTAATGCAGTTAATTATAGCGCCAGCAAGTTACAAGATTCCTGTGAATATCATCCAGCAGAAGATGTTGTTGAAAAGGCAGTGAAGGAGGCAATAAGCAAGCCATGGCTACCAATGCCATTAGGCCTCAAACCTCCTTCCATTGATTGCGTGTTGACTGAGCTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGCTCCAGGCATGATAAACCCGAACCCAAACCCAAAACCCAGTGA 1671 0.4452 MILDFYRRQRNDAKPAMVCTANDIQEWKDFPKGLRVLLLDGDSSSASEIRTKLEAMDYIVSTFCDENEALSAISTKPEGFHVAIVEVSTSSPGSFKILEYAKYLPTIMTSNNHCLSSMMKCVALGAVEFLSKPLSEEKLSNIWQHVVHKAFNTRTSVLPKSLEPVKESEVLQLQTDGREHGSVNLEESRFSDDDHEQSIGSDKYPAPSTPQLKQGARLMDDGDCQEQTNCSTEKESEDHDGESTFVETTRGVLNAEGILQPLKPEKALKNMEHESLANDSKSEKFLSPPVNDGVLSNIEGDIVFPNKAGVHSDSRQIKTKKKVDWTPQLHKKFVKAVEQLGVDQAIPSRILEMMNVEGLTRHNVASHLQKYKMHRRQILPKEDRRWVQQTPVMAFPPYYSNCNPSPAPVYPFWGQSGSQPASMHAWDPPGYPLWHPAESRHWKPYDRIHADAWGFPVLPAPQSPCISYSQNIPGWHNANAVNYSASKLQDSCEYHPAEDVVEKAVKEAISKPWLPMPLGLKPPSIDCVLTELSRQGISTIPPCSRHDKPEPKPKTQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1162 556 FunFam Two-component response regulator 316 379 - -
Lele56g1162 556 Gene3D - 34 157 - -
Lele56g1162 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 317 376 IPR017930 -
Lele56g1162 556 MobiDBLite consensus disorder prediction 173 244 - -
Lele56g1162 556 FunFam Two-component response regulator-like APRR2 33 158 - -
Lele56g1162 556 Pfam Myb-like DNA-binding domain 323 372 IPR001005 -
Lele56g1162 556 Gene3D - 317 378 - -
Lele56g1162 556 PANTHER TRANSCRIPTION ACTIVATOR GLK1 17 543 IPR044825 GO:0003700|GO:0045893
Lele56g1162 556 ProSiteProfiles Response regulatory domain profile. 35 147 IPR001789 GO:0000160
Lele56g1162 556 SUPERFAMILY CheY-like 32 154 IPR011006 -
Lele56g1162 556 SUPERFAMILY Homeodomain-like 318 376 IPR009057 -
Lele56g1162 556 MobiDBLite consensus disorder prediction 227 244 - -
Lele56g1162 556 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 320 374 IPR006447 GO:0003677
Lele56g1162 556 MobiDBLite consensus disorder prediction 180 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1162 Lele-ChrLele56 15081953 15086214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1162 17 544 Response Regulator Gene Family AT4G18020 49.286 7.52e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele56g1162 Myb_DNA-binding 1.6e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0432 49 2531245 2536337 Lele56g1162 56 15081953 15086214 CCT
Lele53g0277 53 2276494 2281242 Lele56g1162 56 15081953 15086214 hybridization
Lele54g0276 54 2317141 2321343 Lele56g1162 56 15081953 15086214 hybridization