Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1157 ATGTCAGTATTATACCATTCTCTTGTGCAGAACTTAGGAGCTCTTGGTTCTCTCCATCCTTCACCAACTCTCTTTTCCATACTTGTCTGCTTCGTGTTCTGTTTCATACATCCAAACATGTCTCTCTGTTCTTTGTCTTCTCTTCTTCTCACCACCACCTTGCTTTTCATGCAAAATCTGGCAGTAATGGACGCTGTGTGTTCCGATTGTTTTGTATCTTCTCGAGCATCCTATTACCCAAACTCTGATGAACATGGAACAGATGTAGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACCGTCAATGGCGGGGACGTCTCAGCTGCTTCTAATCTTTATCGGGATGGTCTCGGCTGTGGTGCCTGTTACCAGGTGAGGTGTAAAAACAGTGGCTATTGTTCAGACAATGGCGTGACGATAGTGATAACAGACCAAGGTTCAGGCCATGACACCGATTTCATTCTTAGCAAACGAGCTTTCACTCAGATGGCTCAGACCAGTGATGCTGCTGCGACTTTGTTGGCTTATGGCGTCGTTGATATTGAATACAGAAGAGTTTCATGCAGCTACCCATCCAAAAATATCACTATTAAGATACATGAAAGTAGCAGCAACCCCAATTACTTGGCATTCGTCATAGAGTACCAACAAGGCAAGAGAGATATCACTGCTGTGCAGCTCTGTGAGACCCAGAACTTTGTGTGCAAGTTGCTAAGTAGGAGTTTTGGAGCAGTGTGGACTGTAAACAATCCTCCAAGTGGACCGTTATCAGTGAGGATGCTGTTTAGTGATGATGATGGGGAAGACACGTGGGTCGTTCCTGTGAATAACATTCCAGAAGACTGGAAAGCTGGAGAAGCCTACGATTCTGGGGTTCAAGTGAACCGATAG 891 0.4534 MSVLYHSLVQNLGALGSLHPSPTLFSILVCFVFCFIHPNMSLCSLSSLLLTTTLLFMQNLAVMDAVCSDCFVSSRASYYPNSDEHGTDVGACGFGSFGATVNGGDVSAASNLYRDGLGCGACYQVRCKNSGYCSDNGVTIVITDQGSGHDTDFILSKRAFTQMAQTSDAAATLLAYGVVDIEYRRVSCSYPSKNITIKIHESSSNPNYLAFVIEYQQGKRDITAVQLCETQNFVCKLLSRSFGAVWTVNNPPSGPLSVRMLFSDDDGEDTWVVPVNNIPEDWKAGEAYDSGVQVNR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1157 296 Gene3D - 189 291 IPR036749 -
Lele56g1157 296 Pfam Expansin C-terminal domain 195 274 IPR007117 -
Lele56g1157 296 Pfam Lytic transglycolase 109 182 IPR009009 -
Lele56g1157 296 Gene3D - 60 188 IPR036908 -
Lele56g1157 296 SUPERFAMILY Barwin-like endoglucanases 62 192 IPR036908 -
Lele56g1157 296 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 207 290 IPR007117 -
Lele56g1157 296 PANTHER EXPANSIN-B3 55 293 - -
Lele56g1157 296 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Lele56g1157 296 PRINTS Expansin/Lol pI family signature 176 192 IPR007118 GO:0005576
Lele56g1157 296 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Lele56g1157 296 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Lele56g1157 296 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 89 193 IPR007112 -
Lele56g1157 296 SUPERFAMILY PHL pollen allergen 193 290 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1157 Lele-ChrLele56 15038441 15042369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1157 54 292 Expansin Gene Family AT4G17030 44.398 1.17e-65 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0282 53 2324035 2326314 Lele56g1157 56 15038441 15042369 hybridization
Lele54g0280 54 2365460 2367586 Lele56g1157 56 15038441 15042369 hybridization