LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g1148	ATGAACTGTTTCTTCTTCAAAAAGAAATCTAATTGCAGGGGAGAGACAAAATCGGCGCCGGAATTGCAAAATGAGAGGCAGAGGAACAGCCCGGCGGTGAACCGGGTTTGCAAGTCGACGAGTTCGATACCGTCGCCGAGGAGCGTGACGGAGTTGTATAAAGAGAAAGCTAAAGAGAACAATTTCAGAGTTTTTAGTTTTCAAGAGCTTCTAGAAGCAACACATGAATTCAATAGGAGGCTCAAGATTGGTGAAGGTGGCTTTGGTAGCGTGTATAAAGGTACGATTAGGCCTCCCGTTGGACGAGGCGATCCAATAGTCGTCGCCATAAAAAAGCTCAACAAGCATGGGTTTCAGGGTCACAAAGAATGGCTTGCTGAAGTTCAATTTCTTGGCGTTGTGAATCATCCAAATCTGGTAAAACTTCTGGGATACTGCTCTGTCGATGGTGAAAGAGGGATCCAACGGTTGTTGGTGTACGAGTATATGGCAAATAGAAGCCTAGAAAATCATCTTTTTAATCCTTCTATTCCTACCTTGCCTTGGAAAAAAAGATTGCAGATCATGATCGGTGCTGCACAGGGATTGTCTTACTTGCATGAAGGATTGGAATTTCAGGTGATTTACCGAGATTTCAAAACTTCAAATGTTCTATTGGATTCGGATTTCCAACCAAAGCTCTCAGACTTTGGTCTTGCAAGGGAAGGCCCCCAAGGCGATAATACTCACGTATCTACTGCGGTGGTTGGAACACAAGGATATGCTGCCCCGGAGTATGTAGAAACAGGGCATCTCAAAGTGGAATGTGACATTTATAGTTTTGGAGTGGTACTGTATGAGATCATCACGGGGAGGCGAGCATTAGATAGGAACCGTCCGGCTGCGGAACAAAAACTTCTAAGTTGGGTTAAGCAGTATCCTGCTGACACCGGCAGATTCAGCATGATTATCGACCCACGTCTCAGAAACCATTTTTCTCCCGGCGCAGTTCGCAAAGTTGCCAAGTTGGCCGATGCCTGTACGAGAAAGAATCCTCAAGAAAGGCCAACTATGGCTCAGATAGTGGAAAGCTTGAAAGAAGCACTGCAGGTTTCCGAGACCTCCGATGCTTCTCAGAGAGAAACTCCCGAATCATCATCTCGATCTTCTTTGGCTCGAAGAGGTAAATAA	1170	0.4547	MNCFFFKKKSNCRGETKSAPELQNERQRNSPAVNRVCKSTSSIPSPRSVTELYKEKAKENNFRVFSFQELLEATHEFNRRLKIGEGGFGSVYKGTIRPPVGRGDPIVVAIKKLNKHGFQGHKEWLAEVQFLGVVNHPNLVKLLGYCSVDGERGIQRLLVYEYMANRSLENHLFNPSIPTLPWKKRLQIMIGAAQGLSYLHEGLEFQVIYRDFKTSNVLLDSDFQPKLSDFGLAREGPQGDNTHVSTAVVGTQGYAAPEYVETGHLKVECDIYSFGVVLYEIITGRRALDRNRPAAEQKLLSWVKQYPADTGRFSMIIDPRLRNHFSPGAVRKVAKLADACTRKNPQERPTMAQIVESLKEALQVSETSDASQRETPESSSRSSLARRGK	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g1148	389	MobiDBLite	consensus disorder prediction	15	43	-	-
	Lele56g1148	389	Gene3D	Transferase(Phosphotransferase) domain 1	163	384	-	-
	Lele56g1148	389	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	163	373	-	-
	Lele56g1148	389	MobiDBLite	consensus disorder prediction	23	43	-	-
	Lele56g1148	389	CDD	STKc_IRAK	83	360	-	-
	Lele56g1148	389	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	207	219	IPR008271	GO:0004672\|GO:0006468
	Lele56g1148	389	ProSitePatterns	Protein kinases ATP-binding region signature.	83	112	IPR017441	GO:0005524
	Lele56g1148	389	MobiDBLite	consensus disorder prediction	363	383	-	-
	Lele56g1148	389	SUPERFAMILY	Protein kinase-like (PK-like)	55	358	IPR011009	-
	Lele56g1148	389	PANTHER	OS01G0588500 PROTEIN-RELATED	35	362	-	-
	Lele56g1148	389	Gene3D	Phosphorylase Kinase; domain 1	48	162	-	-
	Lele56g1148	389	MobiDBLite	consensus disorder prediction	363	389	-	-
	Lele56g1148	389	ProSiteProfiles	Protein kinase domain profile.	77	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele56g1148	389	FunFam	Serine/threonine-protein kinase BIK1	44	162	-	-
	Lele56g1148	389	Pfam	Protein tyrosine and serine/threonine kinase	82	358	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g1148	Lele-ChrLele56	14936946	14939170	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g1148	1	358	Glycoside Hydrolase	AT3G07070	43.052	2.76e-93	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele56g1148		PK_Tyr_Ser-Thr	1.2e-45	CL0016