LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g1125	ATGGCCTACACACTTAGGCAAAGAAAGCAAAACACTAATTATGCAGATTCAGACGGGCCTGGAAGTGATTCGATTGGTTCTGATAAAGACTATTTATCAAGGAGCTGTAGTAGACGCAAAAATAGAAGGAACTTGACATTATCCCCTCCAACTACAAAGGAGACTAAAACAGCAAACTCAATTGTAAATTTGACTGTAAGACGTGGACGAGGTCGAACCTCAAGGAAGAGGACACGGGAAGTACAAAACAAGGAAGCCAGTGATGCTCCAAGTTCAAACAAGAAAAATGAAACCTTGTCTGCTGAACAACCAAGTTCAAACAAAATAACCATTTTATCGTGGTTGGTAGATTGCAATGTTATCAAGGGGGGTGAACATGTCACCTACTCGAATGAAATAAAGGGAAGTACAGCTAAGAGAGGAAGAATTGCTGCAGGTGGAATTCTCTGCAGCTGTTGCCAGAGGGAATATTCTGTGTGGGCATTTGAGAAACATTGTGGAAGTGATGTTAAACAACCCTATGAACATATTTACCTCCTTGAAAAACAAACATCTCTTCTTGAGTCCATGATTATTGCTTGGCACGCGAACAGTGAACTTAAACACCGGGAAACACATTCATTTGTACCCAAAAGAAATGCTAGAGACAAGCATGATTATGCTTGTCCAGTTTGTGGAGATGGGGGAGACTTGATCTGCTGTGAGAAGTGTCCCTCCACATATCATTTAAACTGTTTGAATTTGGAGAGTCTTCCTCAAGGTGAATGGTTTTGTCCTTATTGTGTATGCAAATATTGTGGGCTTGGTGGTAAAAGCAAGCAATTGATTACGTGCTACCAATTTGAATGGGGATGCTTTAAGGAATTTGAGAAAGAAGCTCTTAAAGATGCCTTAGGCCTTGACTGTTCGAGATTATATTTGAAAGGAATTGGAAGACACGCCTATGAGAAATTGGAGAGTTTAGTTGGAGTAAGGAACGAACTTGATGAAAATTTCTCTTGGAGAGTTGTTCGTCAAATGGATGGGACGCCAACTGTCTCTGAACACCAATATTTTGAAAATAATGTCAAGGTTGCGATTACGCGGAAATTAATGGATGAAGCTTTTGAGACAATAGTTGACAGACACACAGGCCTCAACGTGGTTCAAAGTGTAGTATGCAGTCTTGGGTCAAACTTACCCAGGGTTGATTATAGCCGTTTCTATACATTTATACTGGAAAAAGATGATGAGGTTGTATCTGCTGCTTCTGTGAGAATCCATGGGCGGAGGCTTGCAGATATGCCCGTTATGGCCACACATAAAAATTATCGAGGAAAAGGATTCGGTGGACGGCTTCTAGAAGTTGTGGAATCAATCTTACGCGATCTTCAACTAGAAAACTTGATAATCCCGTCTATCCAGGAGAGGGTCAGCATGTGGAAGCGAAAGTTTGGATTCAGCGATCCAAATATCGAGTTGAAAAGAGAGATCGCTTCGTTTAACATTCTGATGTTTTATCAATCTGTAATGCTGTTTAAGGACTTAAGGATGCAGACCCCTGAATCAAATGATAAAAAGGAACAAAAAATTAATCCTGTTGGACGTTCGCTGCTCGACCTCAACATGCCCCCACCTGAAGAACGCATGAGGTCTGGGGAAGATGATGTACAGCTCGTAGCTCGTAGCTCGTAG	1674	0.414	MAYTLRQRKQNTNYADSDGPGSDSIGSDKDYLSRSCSRRKNRRNLTLSPPTTKETKTANSIVNLTVRRGRGRTSRKRTREVQNKEASDAPSSNKKNETLSAEQPSSNKITILSWLVDCNVIKGGEHVTYSNEIKGSTAKRGRIAAGGILCSCCQREYSVWAFEKHCGSDVKQPYEHIYLLEKQTSLLESMIIAWHANSELKHRETHSFVPKRNARDKHDYACPVCGDGGDLICCEKCPSTYHLNCLNLESLPQGEWFCPYCVCKYCGLGGKSKQLITCYQFEWGCFKEFEKEALKDALGLDCSRLYLKGIGRHAYEKLESLVGVRNELDENFSWRVVRQMDGTPTVSEHQYFENNVKVAITRKLMDEAFETIVDRHTGLNVVQSVVCSLGSNLPRVDYSRFYTFILEKDDEVVSAASVRIHGRRLADMPVMATHKNYRGKGFGGRLLEVVESILRDLQLENLIIPSIQERVSMWKRKFGFSDPNIELKREIASFNILMFYQSVMLFKDLRMQTPESNDKKEQKINPVGRSLLDLNMPPPEERMRSGEDDVQLVARSS	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g1125	557	ProSitePatterns	Zinc finger PHD-type signature.	222	261	IPR019786	-
	Lele56g1125	557	MobiDBLite	consensus disorder prediction	514	557	-	-
	Lele56g1125	557	MobiDBLite	consensus disorder prediction	85	102	-	-
	Lele56g1125	557	CDD	PHD2_CHD_II	222	261	-	-
	Lele56g1125	557	ProSiteProfiles	Zinc finger PHD-type profile.	219	264	IPR019787	-
	Lele56g1125	557	MobiDBLite	consensus disorder prediction	42	67	-	-
	Lele56g1125	557	Pfam	PHD-finger	222	263	IPR019787	-
	Lele56g1125	557	CDD	NAT_SF	404	464	-	-
	Lele56g1125	557	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	359	510	IPR000182	GO:0016747
	Lele56g1125	557	SUPERFAMILY	FYVE/PHD zinc finger	215	268	IPR011011	-
	Lele56g1125	557	Pfam	Tify domain binding domain	141	190	IPR032308	-
	Lele56g1125	557	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele56g1125	557	Gene3D	-	359	494	-	-
	Lele56g1125	557	PANTHER	PHD FINGER PROTEIN 12	42	527	IPR042163	GO:0003714\|GO:0045892
	Lele56g1125	557	SMART	PHD_3	221	262	IPR001965	-
	Lele56g1125	557	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	396	481	IPR016181	-
	Lele56g1125	557	MobiDBLite	consensus disorder prediction	1	102	-	-
	Lele56g1125	557	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	209	302	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g1125	Lele-ChrLele56	14731502	14736653	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g1125	91	509	PHD Transcription Factor Family	AT1G05380	37.037	3.66e-89	296

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Lele56g1125		TDBD	2.2e-14	No_clan