Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1121 ATGGCAAACTCTGTTGAGCTTTCGGCCCTCGACCGCATAAAGTTGCATCTTCTAGGTGAATTGTCTCCAGTTGGAACTTTCTCCGGTGGCCTTAGCAGTTCAGCGAGCGATGCTAATCAACAATTCTGGTTTGGTGAATCAAACGGAGCAATTTCCAGCTCTGAATCTGACTCTATTTGTGCCCAATCATCGAATTCTGACTCTTCGATCGATGTGTCCGATTACCTCCCCGAACCCTACGAATTCCTATCCAGCTCCACGGATCTATTTGAGTTCGAGTTCAAAAATCAAGTTATTGACCTCTCAACGCCTAAATTGGAAAATGAAACTCCACAATATGATGCTAATTTCTCCCAATTGGAAGCAAACTCACATGCAACATCAACCTCTGGCTCACAGTCCAGAAGTTCCATGTTCGAGTTTCAAACTAGGCCTCAAAGCGTCGAGAAGCAATCTCATTTGAACCGGAAACCATCGTTGCAAATCACGCTACCCAAAAAAACCGAGTGGATTCAATTTGGAAACCCGGATCAACAACAGTTCACAGAAATGCTCGTGCAGAATAATTCAAACCATGAAGAGAAAAGGCACTACAGAGGGGTCCGACAGAGACCATGGGGCAAGTTCGCAGCCGAGATTCGGGACCCTAATAAGCGTGGATCTAGGGTGTGGCTCGGAACGTTCGACACGGCGATAGAAGCCGCAAAAGCCTACGATCGAGCTGCGTTTAGGCTTCGCGGCTCCAAAGCCATACTCAATTTCCCTCTGGAAGTAGGAACCTCCGGTTCGACGGACGGCATGGAGGAGAAAAAACGCCGGCGTGAAGATGATGAGGGGGAGGCTGAAATTGAAGTGAAACCAGCGGGGAAGAAAGAGAAAACAACGGAATCTGACGTGGGAGGGATAAGGGATATGCCGTTAACACCGTCAATGTGGACAGGGTTCTGGGAGAATGATTTGAAGGACATTTTTCCAGTCCCGCCGTTATCACCGTTATCTCCTCACCCATCTTTGGGCTATCCACAGCTTATGGTTGTATGA 1041 0.4784 MANSVELSALDRIKLHLLGELSPVGTFSGGLSSSASDANQQFWFGESNGAISSSESDSICAQSSNSDSSIDVSDYLPEPYEFLSSSTDLFEFEFKNQVIDLSTPKLENETPQYDANFSQLEANSHATSTSGSQSRSSMFEFQTRPQSVEKQSHLNRKPSLQITLPKKTEWIQFGNPDQQQFTEMLVQNNSNHEEKRHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEVGTSGSTDGMEEKKRRREDDEGEAEIEVKPAGKKEKTTESDVGGIRDMPLTPSMWTGFWENDLKDIFPVPPLSPLSPHPSLGYPQLMVV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1121 346 Pfam AP2 domain 197 247 IPR001471 GO:0003700|GO:0006355
Lele56g1121 346 PRINTS Ethylene responsive element binding protein signature 237 257 IPR001471 GO:0003700|GO:0006355
Lele56g1121 346 PRINTS Ethylene responsive element binding protein signature 198 209 IPR001471 GO:0003700|GO:0006355
Lele56g1121 346 SUPERFAMILY DNA-binding domain 197 257 IPR016177 GO:0003677
Lele56g1121 346 MobiDBLite consensus disorder prediction 259 305 - -
Lele56g1121 346 PANTHER DNA-BINDING DOMAIN 136 275 IPR044808 GO:0003700|GO:0009873
Lele56g1121 346 ProSiteProfiles AP2/ERF domain profile. 197 255 IPR001471 GO:0003700|GO:0006355
Lele56g1121 346 CDD AP2 197 255 IPR001471 GO:0003700|GO:0006355
Lele56g1121 346 Gene3D AP2/ERF domain 196 257 IPR036955 GO:0003700|GO:0006355
Lele56g1121 346 MobiDBLite consensus disorder prediction 264 299 - -
Lele56g1121 346 SMART rav1_2 197 261 IPR001471 GO:0003700|GO:0006355
Lele56g1121 346 FunFam Ethylene-responsive transcription factor 2 196 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1121 Lele-ChrLele56 14701222 14702262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1121 156 346 AP2-EREBP Transcription Factor Family AT5G47230 60.417 8.32e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele56g1121 AP2 1.1e-15 CL0081