Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1117 ATGTTTCCGGAACAACTCGCGTTCTTTACGAACATGAAGGGAGAAGAGGTGAAATGTGGAGAAGAAGAGAAATTACATTTAGGGGACGGCGAAATTGAAAGAACAAGCTTAGTTGTGAATGATGCGAAAAGGGTACTCGTTGGAGCAGGGGCTCGTGCTCTCTTCTATCCCACTCTGCTTTACAATGTGCTTAGGAATAGGTTTCAGGCTGAGTTTCGATGGTGGGATAAAGTTGACGAGTTCATATTATTAGGCGCTGTTCCATTTCCTGTTGATGTTCCCCACTTAAAGGAGCTTGGCGTTTGTGGAGTAATCACATTGAATGAGTCATATGAGACTCTGGTTCCAACCACACTATATCATGCTTATGGAATTGATCATTTGATTATTCCTACAAGAGATTATTGTTTTGCACCATCATTACGTGACATATGCTGTGCTGTGGACTTCCTACATGAAAATGCATTGTGTGGGAGAAGTACGTATGTGCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTATTGTTATCTGCTACTTGGTACATTACAAGATGATGACGCCTGATGCTGCATATGATTATGTGAAGTCAATTCGGCCAAGAGTCCTACTAGCATCTTCTCAGCGGCAAGCTGTTGAGGAATACTACCAGCTCATGGTGAACAGGACAATTTTGTATGCTCCCACAACCAAGTTAGTAGTGAGGGCATCAGAGAAGTTGGTAAATTTTGATGATGATGAGTCTGTAGTTGTGACAGAAACGGATCTTGAAGGGTATGACCCAAGAAGTATCCTATCAGGTGGTGTGGGGAGGGAGATATTTGCACATGTAAGGTTTGTGTTTCATGTTAGAGTTGCTGGCCAAGCTGCACTAGCAAGAATGTCATGGCTCAGCCTGCCATGTTGA 906 0.4371 MFPEQLAFFTNMKGEEVKCGEEEKLHLGDGEIERTSLVVNDAKRVLVGAGARALFYPTLLYNVLRNRFQAEFRWWDKVDEFILLGAVPFPVDVPHLKELGVCGVITLNESYETLVPTTLYHAYGIDHLIIPTRDYCFAPSLRDICCAVDFLHENALCGRSTYVHCKAGRGRSTTIVICYLVHYKMMTPDAAYDYVKSIRPRVLLASSQRQAVEEYYQLMVNRTILYAPTTKLVVRASEKLVNFDDDESVVVTETDLEGYDPRSILSGGVGREIFAHVRFVFHVRVAGQAALARMSWLSLPC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1117 301 ProSitePatterns Tyrosine specific protein phosphatases active site. 163 173 IPR016130 GO:0016311|GO:0016791
Lele56g1117 301 ProSiteProfiles Dual specificity protein phosphatase domain profile. 74 221 IPR020422 GO:0006470|GO:0008138
Lele56g1117 301 CDD PTPMT1 74 217 IPR044596 GO:0004721
Lele56g1117 301 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 67 220 IPR029021 -
Lele56g1117 301 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 142 210 IPR000387 GO:0016311|GO:0016791
Lele56g1117 301 Pfam Dual specificity phosphatase, catalytic domain 114 216 IPR000340 GO:0008138|GO:0016311
Lele56g1117 301 SMART dsp_5 77 218 IPR020422 GO:0006470|GO:0008138
Lele56g1117 301 FunFam Dual specificity phosphatase domain protein 74 221 - -
Lele56g1117 301 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 26 296 - -
Lele56g1117 301 Gene3D Protein tyrosine phosphatase superfamily 74 223 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1117 Lele-ChrLele56 14669982 14672815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1117 22 299 Protein tyrosine phosphatase (PTP) family AT2G35680 59.797 4.79e-116 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0319 54 2743962 2746679 Lele56g1117 56 14669982 14672815 hybridization