Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1107 ATGTACCTCGGCTCGCAGCTCTGCCCCAACACTAATTCAATTCTTCCTCACCGCACTTCTCTTTCTTCTACTTCTTCTTCCTCCTCCTCCTCCATCACCACAGAAACCATTAATGTACACCACGAAGCTCAAGAAGCTCATCACAAAGAAGAGAAGGTGAAGAAGAAGAAGACGATGACGAGTAACAAGAACGCAGAAATGGCCGACGGAAAGCACCCAACTTACAGAGGCGTACGAATGCGTCAATGGGGGAAATGGGTTTCAGAAATCAGAGAACCCAGAAAGAAATCCAGAATATGGCTCGGCACTTTTCCTACTGCAGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTCTCACCATCAAAGGCAGCTCTGCTTTCCTTAACTTCCCGGAGCTAGCGGCGGTGCTTCCTCGTCCTGCCAGTAACTCCCCAAAGGACGTCCAGGCCGCCGCCGCCAAGGCAGCCGCCATCAATTACCACATAAACCGTCAAGAAGCAGAAACCGAGTCCGAGCTCATGCAAGCCGACGCTCCACCACTGTCTAGTTCGCCGTTAACGGACGAGGACGACACGTTCTTCGACCTCCCCGACATCTTAAACCACAGCCGAGGCGCCGACGGGTTTCATTACTCCTCGCTCTGGCTTCTAGCCGGCGCCGATTACAGAGACTCAGGTTTCCGGCTCGAAGATCCATTTCCATGGGACTCTTATTAG 717 0.5314 MYLGSQLCPNTNSILPHRTSLSSTSSSSSSSITTETINVHHEAQEAHHKEEKVKKKKTMTSNKNAEMADGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSAFLNFPELAAVLPRPASNSPKDVQAAAAKAAAINYHINRQEAETESELMQADAPPLSSSPLTDEDDTFFDLPDILNHSRGADGFHYSSLWLLAGADYRDSGFRLEDPFPWDSY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1107 238 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Lele56g1107 238 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Lele56g1107 238 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Lele56g1107 238 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Lele56g1107 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 48 203 - -
Lele56g1107 238 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Lele56g1107 238 MobiDBLite consensus disorder prediction 168 187 - -
Lele56g1107 238 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Lele56g1107 238 MobiDBLite consensus disorder prediction 1 71 - -
Lele56g1107 238 MobiDBLite consensus disorder prediction 1 39 - -
Lele56g1107 238 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Lele56g1107 238 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
Lele56g1107 238 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Lele56g1107 238 MobiDBLite consensus disorder prediction 40 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1107 Lele-ChrLele56 14548948 14550740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1107 71 233 AP2-EREBP Transcription Factor Family AT2G44940 52.000 2.75e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele56g1107 AP2 1.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0533 50 3199740 3206259 Lele56g1107 56 14548948 14550740 CCT
Lele51g0518 51 3054932 3060212 Lele56g1107 56 14548948 14550740 CCT
Lele52g0533 52 3263481 3270443 Lele56g1107 56 14548948 14550740 CCT
Lele53g0327 53 2838818 2839543 Lele56g1107 56 14548948 14550740 hybridization
Lele54g0328 54 2848210 2849668 Lele56g1107 56 14548948 14550740 hybridization