Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1106 ATGGCACCAAAAAACCAGACTAATTCACCCATTAGGAAATTGATTAACCGAGGAGCTTGGACTCCCGAGGAAGATCGAAAACTTGCTCAATGCATTGAACTTCATGGCGCTAAGAGGTGGAAGTCCATTGCTCTTAAATCAGGTTTAAACAGATGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTCAGGCCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATTTAATCCTCAGGCTTCACAAACTTCTGGGAAACAGGTGGTCATTGATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTAAATAGTGAAGAGAAGAAGAAGAAGAAGCCAAACACTTCATCAATCCCACAAGAAGAAAGTACGCCCCAAAATACTTGGGAGTATAGTGCTATTGTGGAGAATAATAATAATGAGGAAGCCCTTAATGGGAATAGTGGAATTGTGAACTCAGAAGTTAGTTTTGATGTGAATGAGTTCCTTGACTTCTCTCCCAAAGAAGGAGGATCCTTTCATGAATTGGATTGGGTGAACAAGTATCTAGAACTAGATGAGTTTCCAGGGACCAATGAGGAATTTTGA 636 0.4072 MAPKNQTNSPIRKLINRGAWTPEEDRKLAQCIELHGAKRWKSIALKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNSEEKKKKKPNTSSIPQEESTPQNTWEYSAIVENNNNEEALNGNSGIVNSEVSFDVNEFLDFSPKEGGSFHELDWVNKYLELDEFPGTNEEF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1106 211 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lele56g1106 211 CDD SANT 19 64 IPR001005 -
Lele56g1106 211 Gene3D - 17 69 - -
Lele56g1106 211 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lele56g1106 211 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Lele56g1106 211 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Lele56g1106 211 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lele56g1106 211 FunFam Transcription factor TT2 73 144 - -
Lele56g1106 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Lele56g1106 211 Gene3D - 74 144 - -
Lele56g1106 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lele56g1106 211 SMART sant 16 66 IPR001005 -
Lele56g1106 211 SMART sant 69 117 IPR001005 -
Lele56g1106 211 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 153 - -
Lele56g1106 211 FunFam MYB-related transcription factor 16 69 - -
Lele56g1106 211 CDD SANT 74 115 IPR001005 -
Lele56g1106 211 MobiDBLite consensus disorder prediction 121 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1106 Lele-ChrLele56 14519902 14521065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1106 4 165 MYB Transcription Factor Family AT3G13540 49.701 4.59e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele56g1106 Myb_DNA-binding 2.8e-18 CL0123