Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1094 ATGGAGGAGAAGCACAAATGCAAGCTCTGCTCCAGAACTTTCGCTCATGGCAGATCACTCGGCGGCCACATGAAAGCCCATTTCGCCACTCTCCCTCTTCCGCCCAAGCCTCAACCACCCCCACCATCACTGCCTTCACCTTCATTCCCATCTTCTTCCTCACAAGATTCAGACGACAAGGCTCTGATTCATGTCCTCGGAGAAAATCCCGAGAACAGCTTCAAGCTCGCAGATCCTGAGTTCTCTTTCGTAGATACTACTGCTGGCTCAGTTATTGTTCAGGACCGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCTTCGATCCAAGAGAACCAGAACCCAGAGGTTAACATCACCCAAGAAGCCTAAACCGAGTCTCTCCGAGTCACCGCCGCCCACTGAACCCGAACCGGCGAGCTCTGTTTCTGAAACTAGCACTGAAGAAGATGTCGCCATGTGTCTCCTTATGCTCTCCAGAGACAAATGGAAGAGAAACGCCGTGAAGGAAGAAGAAGATCGAGACGAGAAATCGAAGCGATTCGAGGAGATAAAGGTGAAGAAAGGAGTTCGCGGTAAGCACCAGTGTGAGAAATGCAGAAAAACGTTTCGATCATTTCGAGCATTGGGGAGTCACAGAAACGTCTGTTTTCGAGATGAAGAAGAAGCTAGAAACGCAGGTAACAACAACAACAACGATTCGATTTTCGAATGCCCATTTTGTTACAAGGTGTTCGGGTCGGGTCAAGCACTCGGAGGCCACAAGAGATCTCATCCTGTACAATCTTCATTGTCAACATTGAATTCTGCAACATTAATTAAGAAAAGCTTCATAGATCTCAACTTGCCAGCTCCAGCTGCAGCAGCAGCAGCAGAAGATGAACTCAGTGTGGTTTCTGATGCATGA 909 0.4873 MEEKHKCKLCSRTFAHGRSLGGHMKAHFATLPLPPKPQPPPPSLPSPSFPSSSSQDSDDKALIHVLGENPENSFKLADPEFSFVDTTAGSVIVQDRESETESKNPTRLRSKRTRTQRLTSPKKPKPSLSESPPPTEPEPASSVSETSTEEDVAMCLLMLSRDKWKRNAVKEEEDRDEKSKRFEEIKVKKGVRGKHQCEKCRKTFRSFRALGSHRNVCFRDEEEARNAGNNNNNDSIFECPFCYKVFGSGQALGGHKRSHPVQSSLSTLNSATLIKKSFIDLNLPAPAAAAAAEDELSVVSDA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1094 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Lele56g1094 302 Gene3D Classic Zinc Finger 192 259 - -
Lele56g1094 302 MobiDBLite consensus disorder prediction 25 148 - -
Lele56g1094 302 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Lele56g1094 302 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 301 IPR044303 GO:0006355
Lele56g1094 302 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Lele56g1094 302 MobiDBLite consensus disorder prediction 32 48 - -
Lele56g1094 302 Coils Coil 161 181 - -
Lele56g1094 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Lele56g1094 302 SUPERFAMILY beta-beta-alpha zinc fingers 195 259 IPR036236 -
Lele56g1094 302 SMART c2h2final6 195 215 IPR013087 -
Lele56g1094 302 SMART c2h2final6 237 259 IPR013087 -
Lele56g1094 302 SMART c2h2final6 5 27 IPR013087 -
Lele56g1094 302 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Lele56g1094 302 Pfam C2H2-type zinc finger 195 214 - -
Lele56g1094 302 Pfam C2H2-type zinc finger 237 259 - -
Lele56g1094 302 Pfam C2H2-type zinc finger 5 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1094 Lele-ChrLele56 14369673 14370581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1094 3 299 C2H2 Transcription Factor Family AT3G60580 37.812 8.62e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele56g1094 zf-C2H2_6 1.1e-10 CL0361