Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1084 ATGGACGGTCCTTTCATCTCTGTTGCTACATTGAAAGAAATTTTTTTTGAATCAAAGCATTTAGGCAGGGGTACTGATTTCGACCTTGTGGTCACCAACGCCCAGACCAATGAAGCTTTGTAGCAAAAGGTGGAAAATAAGGTGGTCGAAACTGAGCCTGAAAAGAGTGGCATACCAACTGTTGATGCCTCCATGAAATATGTTGAAGACTCTGAATGGGATGAATTTGGCAATGAGTTGTATGCAATTCCTGATGTATTGCCTGTTCAATCAAGCAACTTAATACCAGAGGCTCCTCCAACTACAAATAAAGCTGATGAGGACAGTAAAATTAAGGCCTTGATTGACACTCCAGCTTTGGATTGGCAACGACAAAGTTCTGATGGCTATGGTAGAGGTTTTGGAAGGGGCATGGGTGGACGAATGGTGGGTGGACGTGGGTTGCAACAGAAAACACCTCCACCAGGGTATGTGTGTCATAGATGCAAGGTGCCTGGGCATTTTATTCAGCATTGTCCTACAAATGGTGATCCAAATTATGACCTTAAGAGGGTGAAGCCACCCACTGGCATTCCAAGATCAATGCTCATGGCAGCTGCCGATGGTTCTTATGCTTTACCAACTGGTGATGTAGCTGTCTTGAAGCCAAACGAGGACTACATTATCTCCAAATCCGTTTGCGTTTGTGGTGCAGCTAATATACTTGCAGATGATCTTTTACCAAATCAAACAACAAGAGACCTAATTAGTCGCATAATGGAGACAGGAACTACTAGTGCCGAAAATGCTGGGAGCTCATATCAAGTTCAAGATGTGGAGTCTGCTCGTTGTCCACAGCCCAAGATTCCTTCTCCAACCTCATCTGCTGTGTCTAAAGGAGAACAAAAGGTACCTCCTTCCGATGAAGGAAAAACAAAAGTTCAGGAGGCAGCTGATGATAGAAAGGCTATATATGTGCCGCAGAAGATGTCTGAAGAAGTAAAGGCCACAGGAGCTGCTGATGTATCTGAAGCTACTCATGAATCAGTGACTGTAAAGGAACCAGCTTCACAAGGTAGTGCTCAGCTGGTTGAAGAAGAAGTGCAACAAAAGTTGGCTCCTACTGAGGCAGACTTTCAGTGGAAAACTCCCCAAGACTTTGGAGCTGATAACTATATGATGCCTATGGGCCCGCCTCCAGTCTATAATCCATACTGGAATGGCATGCAACCTGGCATGGAAGGATTTGTGGCACCATATGGAGGTGCAATGCAAATGATGAATTATGGTTTAGGTCCCTTAGATATGCCTTTTGGGGGTGTTATGCCTCATGATCCCTTTGGCATGCAGAACTACATGATGCCTGTTGTTCCACCTCCAAGGGGTCTTGCGGAGTTAAGTATGGGCATGAATGGTATGGGCATGAATGGAATGAATGCCATGAATGCTCCGCCTCCGATTATGAGTAGAGAGCAGTTTGAAGCCCGGAAAGCTGATCTCAGGCGGAAGCGTGAAATTGAGAGACGTGGAGAAAGGGATATTGCCAAAGATCGGGAGATTGGTAGGGAAGTGAACAGTGGTGCTGGGGATGTTCCTCCGATGAGATCAAAATCTAAATCAATTCCTCCACCGTCGAGTACCGCGTACAACCATCTCCACCGTACGCGTTTGGAGCGGCCATCGCCAGATCTATCTTCACGCGAGGTTGAAACTTCACGCTCCTCTAAGAGGAAATCTGAGCACCACCTTGATCGCGATCGTGATTACGACAACGATCGTGACCGTGATTTGGATCCAGAATATGGCTACCCTAATAACGACCGACATCACCATCGCCATCACCACTCCGAGCCTTCATCAAGGCGCTCCTCTGAGCCGGCGACCAAGGCCTCCTCTGCCACGGCAGCGGCGGCGGCTGCAGATCGGAAGTACAAGGCCAGTGTCTTCTCTCGCATAAGCTTCCCTGAGGGCGAAGTTTCCAAGAAGAGAAAGGTCGCCACGTCATCGTCTTCTGCAGAACCAGTCAGAGAATCGACGACTTCGGCGCATCACAAGTCAGTACCGAATGGGTATTATGACGATTACAAATCGTCGGGGCTAGGGAAGGTCGTTTCGACAGTTGGAGGAAGGAAGAAGAGTGTGGATTATGAATCTAGCGATGAGGAACGGCATTTCAAACGGAGGCCGTCTAGGAAATTTAGTGTTTGCTTACAGGTTGTAGACTCAGAATGGGATGACTTCGGTGATGAGTTGTATGCAATTCCTCCAACAAATAGAGTCGATGAAGACAGTAAGACTAAGGTCTTGATTGATCTCCCCACTATCAAATTGGTATCGGGTAGCAGCCGAAAACACTTCCACAAGGTTATGTGTGTCACAGATGCCGTATGCCAGAGGGTGAGGTGCTGGGAGTATCGTCAGCAACCTTCCATTGTCCGTCTGACTAGGCCTACTCGTCCAGACAAGGCTCGTCGCTTGGGCTACAAGGCTAAGCAGGGTTATGTGGTTTACCGTGTTCGAGTTCGTAGGGGTGGCAGAAAGAGACCAGTTCCCAAAGGTATTGTCTATGGTAAGCCCACAAATCAAGGTGTTACCCAACTGAAATTCCAGAGGAGCAAGAGGTCAGTAGCCGAGGAGCGAGCAGGACGGAAGCTAGGTGGGCTTAGGGTCCTCAATTCTTATTGGGTGAATGAGGACTCCACATATAAATACTACGAGATAATCCTGGTGGATGTGGCTCACAATGCCATCAGAAATGACCCAAGGATCAACTGGCTCTGCAATCCTGTTCACAAACACAGGGAGCTGCGTGGTCTCACTTCTGCTGGGAAGAAATACAGAGGCCTCCGCGGCAGAGGACACCTCTACCACAAAGCTCGCCCATCCCGTAGGGCTACCTGGAAGAGAAACAACACCCTTTCCCTCCGTCGTTACCGATGA 2919 0.4813 MDGPFISVATLKEIFFESKHLGRGTDFDLVVTNAQTNEALXQKVENKVVETEPEKSGIPTVDASMKYVEDSEWDEFGNELYAIPDVLPVQSSNLIPEAPPTTNKADEDSKIKALIDTPALDWQRQSSDGYGRGFGRGMGGRMVGGRGLQQKTPPPGYVCHRCKVPGHFIQHCPTNGDPNYDLKRVKPPTGIPRSMLMAAADGSYALPTGDVAVLKPNEDYIISKSVCVCGAANILADDLLPNQTTRDLISRIMETGTTSAENAGSSYQVQDVESARCPQPKIPSPTSSAVSKGEQKVPPSDEGKTKVQEAADDRKAIYVPQKMSEEVKATGAADVSEATHESVTVKEPASQGSAQLVEEEVQQKLAPTEADFQWKTPQDFGADNYMMPMGPPPVYNPYWNGMQPGMEGFVAPYGGAMQMMNYGLGPLDMPFGGVMPHDPFGMQNYMMPVVPPPRGLAELSMGMNGMGMNGMNAMNAPPPIMSREQFEARKADLRRKREIERRGERDIAKDREIGREVNSGAGDVPPMRSKSKSIPPPSSTAYNHLHRTRLERPSPDLSSREVETSRSSKRKSEHHLDRDRDYDNDRDRDLDPEYGYPNNDRHHHRHHHSEPSSRRSSEPATKASSATAAAAAADRKYKASVFSRISFPEGEVSKKRKVATSSSSAEPVRESTTSAHHKSVPNGYYDDYKSSGLGKVVSTVGGRKKSVDYESSDEERHFKRRPSRKFSVCLQVVDSEWDDFGDELYAIPPTNRVDEDSKTKVLIDLPTIKLVSGSSRKHFHKVMCVTDAVCQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1084 972 Gene3D Ribosomal protein l15e 768 972 IPR024794 GO:0003735|GO:0005840
Lele56g1084 972 MobiDBLite consensus disorder prediction 125 149 - -
Lele56g1084 972 Pfam DWNN domain 1 41 IPR014891 GO:0008270
Lele56g1084 972 Pfam Zinc knuckle 154 174 IPR025829 -
Lele56g1084 972 MobiDBLite consensus disorder prediction 657 679 - -
Lele56g1084 972 FunFam Ribosomal protein L15 767 972 - -
Lele56g1084 972 SUPERFAMILY Retrovirus zinc finger-like domains 146 177 IPR036875 GO:0003676|GO:0008270
Lele56g1084 972 Gene3D - 1 67 - -
Lele56g1084 972 MobiDBLite consensus disorder prediction 545 600 - -
Lele56g1084 972 Pfam Ribosomal L15 790 958 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lele56g1084 972 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 790 963 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lele56g1084 972 PANTHER RIBOSOMAL PROTEIN L15 781 972 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lele56g1084 972 MobiDBLite consensus disorder prediction 280 294 - -
Lele56g1084 972 Gene3D - 151 202 - -
Lele56g1084 972 ProSiteProfiles DWNN domain profile. 1 59 IPR014891 GO:0008270
Lele56g1084 972 SMART Ribosomal_L15e_2 766 961 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lele56g1084 972 MobiDBLite consensus disorder prediction 260 309 - -
Lele56g1084 972 MobiDBLite consensus disorder prediction 648 685 - -
Lele56g1084 972 MobiDBLite consensus disorder prediction 485 517 - -
Lele56g1084 972 ProSitePatterns Ribosomal protein L15e signature. 814 837 IPR020925 GO:0003735|GO:0005840|GO:0006412
Lele56g1084 972 MobiDBLite consensus disorder prediction 470 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1084 Lele-ChrLele56 14256097 14271671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1084 769 972 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 85.294 8.08e-103 317