Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1062 ATGGGTCGTGGGGCCCAGAGTCCACAGAAGCAGAATGATATACTTGGAGAAGAGAGGAAGGGAATGGCGTATTTGGAGAGGTGTCACTTTCGTATTGTCGAAGGTTTTGAAACTTATCAAGCAGCGGACATGAATACATTTTCACATGTTCCTCCGGGGTTTCGATTTCATCCCACAGACGAAGAACTGGTTGATTACTACCTCAGAAAGAAGGTAGCTTCTAAAAGGATTGATCTTGATGTCATCAAGGACGTTGATCTCTACAAAATTGAGCCATGGGATCTTCAAGAACTGTGCAGAATAGGAAGCGAGGAACAGAATGAATGGTACTTCTTCAGCCACAAAGATAAGAAGTATCCGACAGGGACTCGAACAAACAGAGCGACAAAAGCAGGATTCTGGAAGGCAACAGGAAGAGATAAAGCAATATATACAAGGCATTGTCTGATTGGGATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCTCCTAATGGCCAGAAATCTGACTGGATCATGCATGAATATCGCCTTGAAACTAATGAAAACGCTACTCCTCAGGAAGAAGGGTGGGTTGTATGCAGAGTGTTCAAGAAGAGAATGACGACAGTGAGAAAAGTGGGAGAATATGAATCACCATGTTGGTACGACGAAGCAGCCTCGTTGATGCAAGAGCTTGATCAATCTCCAAGGCGTCATCATCATCATCATCATAATATTTCTGCCGGATCACCTTACTACGCATGCAAGCAAGAGTTTGAATTCCAATACAACTTCAATAATCTTCCCCACGACGCTTTCCTTCAACTTCCTCAGCTTGAAAGCCCTAATAAACTCCCCACCATCTTCAGCAACACCGCCGCCTTCGATCAACACCACAGAACCGCCGCCGCCGCCGCTACTATGCAGTCATCGACGGCGGCGCTTTATGATGATCAAGTAATCACTGATTGGAGGGTGTTTGATAAGTTTGTTGCTTCTCAGCTGAGTCAAGATCTCCATCATCAACAACAACAAGCTTCCAAGGAAACAACTTACGATAATAATTCCAATAATGCTGACGACGTTGTTGCTGTCACTGAACAAGTTACCATGTTGGACAATGCATCCGCATCCACCACCACCTGCGACATTGAACAATGGAAGTGA 1149 0.4456 MGRGAQSPQKQNDILGEERKGMAYLERCHFRIVEGFETYQAADMNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRIGSEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYTRHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENATPQEEGWVVCRVFKKRMTTVRKVGEYESPCWYDEAASLMQELDQSPRRHHHHHHNISAGSPYYACKQEFEFQYNFNNLPHDAFLQLPQLESPNKLPTIFSNTAAFDQHHRTAAAAATMQSSTAALYDDQVITDWRVFDKFVASQLSQDLHHQQQQASKETTYDNNSNNADDVVAVTEQVTMLDNASASTTTCDIEQWK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1062 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 49 336 - -
Lele56g1062 382 SUPERFAMILY NAC domain 46 199 IPR036093 GO:0003677|GO:0006355
Lele56g1062 382 Pfam No apical meristem (NAM) protein 51 178 IPR003441 GO:0003677|GO:0006355
Lele56g1062 382 FunFam NAC domain-containing protein 59 203 - -
Lele56g1062 382 ProSiteProfiles NAC domain profile. 50 199 IPR003441 GO:0003677|GO:0006355
Lele56g1062 382 Gene3D NAC domain 59 203 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1062 Lele-ChrLele56 13977054 13981911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1062 44 332 NAC Transcription Factor Family AT1G62700 61.702 1.18e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele56g1062 NAM 4.9e-38 No_clan