Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1059 ATGTGTGTTCTTCTAAGAGCTTCGCAGCCGCTTGTTCTTGGCTCTCAGTCGCGTCATCCACGTCGCTGCTATAGGAAGATGGGTGAAAAACGCCATCTTTCTGCGGCAAATATGGCGACGGAGTCTCTCAGAGTGACGGCGGCCTCAGCTTCAGCTTCCACTCTTCGCAATTTCAACCATGGGTCTCAGAGGAAGCCAACCCCTCTCTCTCCACTCCCTTTCATGGGTGTTCGACCTCGACCCTCTCGTTCTCTTACTTCATCTTCTCTTTCTCAGTTCTTTGGAACTTCCCCAATTAAGTCTAAATCTTCCCGGCTCTCTGATTTTCGCCACCATATCAGAAGAAACTTATCTGTTTTCGCCATGGCCGCTGAAGATGCGGGTCGAGCTATTCCATTGAAAGATTATCGCAACATTGGAATCATGGCACACATTGATGCTGGAAAGACAACCACAACCGAAAGAATTCTCTACTATACAGGAAGAAACTACAAAATTGGAGAAGTGCATGAGGGAACAGCTACCATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACCATAACTTCTGCTGCAACCACCACATTTTGGAATAAGCACCGGATCAACATTATTGATACGCCTGGTCATGTTGACTTCACCCTTGAAGTGGAGCGAGCTCTAAGGGTGCTAGATGGAGCCATATGCTTGTTTGATAGTGTTGCTGGTGTGGAACCACAATCAGAAACTGTGTGGAGACAAGCTGATAAATATGGAGTTCCACGTATTTGTTTTGTTAACAAGATGGACCGTCTGGGAGCAAACTTTTTCCGAACAAGAGATATGATAGTGACAAACTTGGGTGCTAAACCACTCATAATTCAGATTCCAATTGGTTCGGAAGATAACTTCAAGGGAGTCGTTGATCTTGTAAGAATGAAAGCTATAGTTTGGTCTGGAGAAGAGTTAGGTGCCAAGTTTGCTTATGAAGATATTCCAGACAATCTTCAAAAGTTGGCTCAAGATTATCGATCCCAGATGATTGAAACAATAGTTGAGTTGGATGATCAAGCCATGGAGAATTACCTAGAAGGAAATGAACCAGATGAGGAAACCATCAAAAGATTAATTAGGGAGGGAACCTTATCGGGAAACTTTGTGCCAGTACTGTGTGGCTCGGCTTTCAAAAACAAGGGGGTTCAACCGCTGCTTGATGCTGTTGTGGATTATCTACCATCACCAATTGAGTTGCCACCAATGAAGGGAACTGAGCCTGAAAACCCTGAAGTGATAGTAGAAAGGAAAGCAAGTGATGACGAAGCATTCTCTGGATTAGCTTTTAAGATCATGAGTGATCCATTCGTTGGTTCCCTTACGTTTGTGAGGGTGTATTCTGGAAAGCTAACTGCAGGGTCTTATGTACTCAATGCAAACAAAGGGAAGAAGGAGAGAATTGGTAGACTGCTGGAAATGCATGCGAACAGCAGGGAGGATGTTAAAGCAGCTTTAACAGGTGATATTATTGCTCTTGCAGGTTTAAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAGCCCTGTTGTGCTTGAGCGAATGGACTTCCCTGATCCTGTGATAAAGGTTGCCATTGAGCCCAAAACTAAAGCTGATGTTGACAAGATGGCAACTGGTTTAATTAAGCTTGCCCAAGAAGATCCTTCTTTCCACTTCTCTAGGGATGAAGAGATTAACCAGACGGTCATTGAAGGAATGGGAGAATTGCATCTTGAAATCATTGTTGATCGACTTAAGAGAGAATTTAAGGTAGAAGCTAACGTTGGTGCACCCCAAGTGAACTACAGGGAAAGCATTTCCAAAGTCTCAGAAGTGAAGTATGTGCACAAGAAACAGTCAGGAGGACAAGGTCAATTTGCTGATGTCACTATTCGTTTTGAACCCATGGAGGCAGGAAGTGGGTATGAGTTCAAGAGTGAGATCAAAGGAGGTGCTGTACCGAAAGAATACATCCCGGGAGTGATGAAAGGATTGGAGGAGTGTATGAGCAATGGTATACTCGCTGGATTTCCAGTAGTTGATGTACGTGCGGTACTTGTAGATGGATCTTACCATGATGTAGATTCAAGTGTCCTAGCTTTCCAGTTGGCAGCAAGAGGAGCTTTCCGGGATGGAATGAGAAAAGCAGGACCAAAGATGCTTGAACCAATTATGAAAGTTGAAGTGGTTACTCCTGAAGATCATCTAGGAGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGTTTTGGTGACAAACCCGGTGGCCTAAAGGTGGTTGATTCTCTGGTTCCTCTGGCTGAGATGTTTCAGTATGTGAGTACGCTGAGGGGGATGACAAAGGGACGTGCGTCTTACACAATGCAATTAGCCAAGTTTGATGTCGTGCCTCAGCACATCCAAAACCAACTCTCCTCTAAGGAGCAAGAAGTTGCCGCTTAA 2472 0.443 MCVLLRASQPLVLGSQSRHPRRCYRKMGEKRHLSAANMATESLRVTAASASASTLRNFNHGSQRKPTPLSPLPFMGVRPRPSRSLTSSSLSQFFGTSPIKSKSSRLSDFRHHIRRNLSVFAMAAEDAGRAIPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLIIQIPIGSEDNFKGVVDLVRMKAIVWSGEELGAKFAYEDIPDNLQKLAQDYRSQMIETIVELDDQAMENYLEGNEPDEETIKRLIREGTLSGNFVPVLCGSAFKNKGVQPLLDAVVDYLPSPIELPPMKGTEPENPEVIVERKASDDEAFSGLAFKIMSDPFVGSLTFVRVYSGKLTAGSYVLNANKGKKERIGRLLEMHANSREDVKAALTGDIIALAGLKDTITGETLCDPDSPVVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADVTIRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGILAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFRDGMRKAGPKMLEPIMKVEVVTPEDHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNQLSSKEQEVAA 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1059 823 CDD EF-G 138 408 - -
Lele56g1059 823 SUPERFAMILY EF-G C-terminal domain-like 729 818 IPR035647 -
Lele56g1059 823 CDD EFG_mtEFG_II 436 518 - -
Lele56g1059 823 Gene3D Translation factors 419 532 - -
Lele56g1059 823 FunFam Elongation factor G 418 533 - -
Lele56g1059 823 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 134 409 IPR000795 GO:0003924|GO:0005525
Lele56g1059 823 Gene3D - 611 813 IPR014721 -
Lele56g1059 823 FunFam Elongation factor G 534 610 - -
Lele56g1059 823 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 119 819 - -
Lele56g1059 823 SMART EFG_IV_2 606 724 IPR005517 GO:0005525
Lele56g1059 823 TIGRFAM small_GTP: small GTP-binding protein domain 136 306 IPR005225 GO:0005525
Lele56g1059 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 407 IPR027417 -
Lele56g1059 823 SMART EFG_C_a 726 814 IPR000640 -
Lele56g1059 823 FunFam Elongation factor G 730 801 - -
Lele56g1059 823 Gene3D - 730 801 - -
Lele56g1059 823 Gene3D - 128 418 IPR027417 -
Lele56g1059 823 Hamap Elongation factor G, chloroplastic. 126 823 IPR030848 GO:0003746|GO:0006414|GO:0009507
Lele56g1059 823 SUPERFAMILY EF-G C-terminal domain-like 530 607 IPR035647 -
Lele56g1059 823 Pfam Elongation factor Tu GTP binding domain 135 407 IPR000795 GO:0003924|GO:0005525
Lele56g1059 823 PRINTS GTP-binding elongation factor signature 138 151 IPR000795 GO:0003924|GO:0005525
Lele56g1059 823 PRINTS GTP-binding elongation factor signature 256 265 IPR000795 GO:0003924|GO:0005525
Lele56g1059 823 PRINTS GTP-binding elongation factor signature 204 214 IPR000795 GO:0003924|GO:0005525
Lele56g1059 823 PRINTS GTP-binding elongation factor signature 220 231 IPR000795 GO:0003924|GO:0005525
Lele56g1059 823 PRINTS GTP-binding elongation factor signature 184 192 IPR000795 GO:0003924|GO:0005525
Lele56g1059 823 TIGRFAM EF-G: translation elongation factor G 129 818 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele56g1059 823 Pfam Elongation factor Tu domain 2 450 517 IPR004161 GO:0005525
Lele56g1059 823 Pfam Elongation factor G, domain IV 605 723 IPR005517 GO:0005525
Lele56g1059 823 Hamap Elongation factor G [fusA]. 132 818 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele56g1059 823 SUPERFAMILY Ribosomal protein S5 domain 2-like 605 725 IPR020568 -
Lele56g1059 823 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 177 192 IPR031157 -
Lele56g1059 823 CDD EFG_III 531 606 IPR009022 -
Lele56g1059 823 CDD EFG_mtEFG1_IV 609 724 IPR005517 GO:0005525
Lele56g1059 823 Pfam Elongation factor G C-terminus 727 813 IPR000640 -
Lele56g1059 823 SUPERFAMILY Translation proteins 390 530 IPR009000 -
Lele56g1059 823 FunFam Elongation factor G 611 741 - -
Lele56g1059 823 Gene3D Elongation Factor G (Translational Gtpase), domain 3 533 610 - -
Lele56g1059 823 CDD EFG_mtEFG_C 729 807 IPR035649 -
Lele56g1059 823 FunFam Elongation factor G 127 418 - -
Lele56g1059 823 MobiDBLite consensus disorder prediction 55 74 - -
Lele56g1059 823 Pfam Elongation Factor G, domain III 530 603 IPR041095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1059 Lele-ChrLele56 13935331 13945056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1059 135 794 Eukaryotic Initiation Factors Gene Family AT1G56070 24.693 3.17e-41 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0376 53 3532071 3536094 Lele56g1059 56 13935331 13945056 hybridization
Lele54g0380 54 3404450 3410359 Lele56g1059 56 13935331 13945056 hybridization