Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1053 ATGGGGAGAAAACCTTGCTGTGACAAACTTGAAGTGAAGAAAGGACCGTGGACTGCTGAAGAAGACAAGAAGCTCATCAACTTCATTCTCACTAATGGTCGCTGTTGCTGGCGAGCCGTTCCGAAGCTCGCCGGCCTTAGGCGATGCGGCAAGAGTTGTAGGCTTCGTTGGACTAACTATCTTCGTCCTGACTTGAAGAGAGGCCTCCTCACTGATGCAGAAGAGAACCTCGTAATTGATCTCCATTCTCGCCTCGGCAACAGGTGGTCTATGATAGCTGCGAAATTACCAGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACACACATCAAGAAGAAGCTGCTTAAGATGGGTACTGATCCTATTACTCATGAGCCTCTCAAGAAAGAAGCTGCTTCCCAGGATAATTCTTCATCCCCTGCAGAGCATTTGTCACAATCTGACAGTGATCACAATATTCAGGTGAATGTTCTGAACTCAAAGGAGAATTCAATGTCATCATTACCAACTGAAAATTCATGTGGGGATGAACCACTTTCGCAAAAAATCAATCATCGTGATGATGACGACTTGTGGCCGGACGAAACTTCACTGGTGGATGCATTATGGGAAAGGATACCTGATGCACAGAATGATAATTATGACTTGGCAATGTCATCTTGGGAGGACACTAGTTCCAGCTGGCTATTGAACTCTCAGGACTTTGGTTTTAATTGCTTCAATGGGATTGAGCCTCATGCTCTCCTCCAGACTTTAGAAATGGAGGAGAAAGAACATTAG 786 0.4466 MGRKPCCDKLEVKKGPWTAEEDKKLINFILTNGRCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTDAEENLVIDLHSRLGNRWSMIAAKLPGRTDNEIKNHWNTHIKKKLLKMGTDPITHEPLKKEAASQDNSSSPAEHLSQSDSDHNIQVNVLNSKENSMSSLPTENSCGDEPLSQKINHRDDDDLWPDETSLVDALWERIPDAQNDNYDLAMSSWEDTSSSWLLNSQDFGFNCFNGIEPHALLQTLEMEEKEH 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1053 261 Gene3D - 11 67 - -
Lele56g1053 261 SMART sant 66 114 IPR001005 -
Lele56g1053 261 SMART sant 13 63 IPR001005 -
Lele56g1053 261 FunFam MYB transcription factor 68 129 - -
Lele56g1053 261 FunFam MYB transcription factor 11 67 - -
Lele56g1053 261 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele56g1053 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele56g1053 261 CDD SANT 71 112 IPR001005 -
Lele56g1053 261 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele56g1053 261 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lele56g1053 261 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele56g1053 261 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele56g1053 261 MobiDBLite consensus disorder prediction 134 152 - -
Lele56g1053 261 MobiDBLite consensus disorder prediction 165 181 - -
Lele56g1053 261 CDD SANT 16 61 IPR001005 -
Lele56g1053 261 Gene3D - 70 152 - -
Lele56g1053 261 MobiDBLite consensus disorder prediction 129 152 - -
Lele56g1053 261 PANTHER F14D16.11-RELATED 1 181 - -
Lele56g1053 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele56g1053 261 MobiDBLite consensus disorder prediction 165 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1053 Lele-ChrLele56 13807838 13808772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1053 1 245 MYB Transcription Factor Family AT4G12350 54.710 4.68e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele56g1053 Myb_DNA-binding 2.5e-13 CL0123