Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1042 ATGGCATGGCCTATTTCATTTGGTCCAGGCTTGGTGTGCACTATCTGTGCCAGCGCCAGTACTAGTTGGGTAACATCATGGCTGTGTCCGCCATCTTTGAAATTTGAAAGGGACTTATTTCAGAAAGCCCCTTCTGCTTTGTGCTTTAATCAGTCCATTATAAACATATTTCATAAACAAGGTTTTGTCCGTGGAGCATTGCGAGCAAGATTTGAAGGCAGCTTAGCTCTGAGAAGATGGGGCGTATGCACAGCCGTTGAAGAAAATATCTGCAAATTCGCGAAGAAGGGGTTGACTCCGTCGCAGATTGGTGTCATTCTCCGAGATTCTCACGGACTTGCGCCCGAAATTCCAGAGGATCTTTATCATTTGATCAAGAAGGCAGTTTCAATTCGCAAGCATCTTGAGAGAAACAGGAAGGACAAGGATTCCAAGTTCAGGTTAATTCTGGTCGAAAGCAGAATCCACCGGCTTGCTCGCTATTACAAAAAAACTAAGAAGCTCCCACCAGTATGGAAATAG 522 0.4483 MAWPISFGPGLVCTICASASTSWVTSWLCPPSLKFERDLFQKAPSALCFNQSIINIFHKQGFVRGALRARFEGSLALRRWGVCTAVEENICKFAKKGLTPSQIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1042 173 CDD Ribosomal_S15p_S13e 107 173 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele56g1042 173 Gene3D - 88 115 - -
Lele56g1042 173 SMART Ribosomal_S13_N_2 68 113 IPR012606 GO:0003735|GO:0005840|GO:0006412
Lele56g1042 173 Pfam Ribosomal protein S15 112 167 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele56g1042 173 PANTHER RIBOSOMAL PROTEIN S15P/S13E 85 173 IPR023029 -
Lele56g1042 173 FunFam 40S ribosomal protein S13 116 173 - -
Lele56g1042 173 SMART Ribosomal_S15_2 105 173 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele56g1042 173 SUPERFAMILY S15/NS1 RNA-binding domain 108 172 IPR009068 -
Lele56g1042 173 ProSitePatterns Ribosomal protein S15 signature. 131 161 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele56g1042 173 Gene3D - 116 173 - -
Lele56g1042 173 Pfam Ribosomal S13/S15 N-terminal domain 85 112 IPR012606 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1042 Lele-ChrLele56 13625892 13629350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1042 86 173 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 78.704 8.13e-54 166