Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1014 ATGGCGACTCACAAATTTTCCTTCACATTAACGTGCCCTCGTCCCTCCATTGTTCCCAACCCAAGACCTTCCATTCTAATTTCTTTGTTGTCTTCTCCTGATGCTTCTGGTGGAGTCCACTTGATTCAGTTCAATGGCCGCCGCTACTTCTGTCTTCGCCGCCGTGGCCGTGTTTTCAAGGCCGCAGCCGATCAACAAGGTGTCACTCCACCACCACCACCGCCTTCAGGCAAGGTTGAAGAAGATGAAGAAGGCGTTGACGGTAAAATCCTTCCGTATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTCGGCGAACTTGAACAAGAATTTCTTCAAGCACTGCAAGCATTCTACTATGAGGGAAAGGCTATTATGTCGAATGAGGAATTTGATAATCTGAAGGAAGAACTTATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGAACAGAAGTTTCTGGAAGCTTCTATGGCTTATGTTTCTGGAAAACCAATCTTGAACGATAAAGAGTTTGATGATTTGAAGCTGAGGCTAAAGATAGAAGGAAGTGAAATTGTCGCTGAGGGTCCACGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACTTGTCTATTGATTACTTGAAGATGCTCTCACTGAACGTCCCAGCAACCGTCGTTTCATTAGGATTGTTCTTTTTCGTTGATGATCTGACTGGATTTGAGATCAAAAATCTGATAGAGATTCCGGAGCCTTTCAGCTTCATTCTTACTTGGTTTGCGGCTGTTCCCTTCATTCTGTGGCTAGCTCAGGCTCTCACAAATGCAGTTGTAAAAGACTCTTTGATTTTAAAGGGCCCTTGTCCAAACTGTGGTACTGAAAATACTTCCTTCTTTGGGACCATACTCTCAATTTCAAGTGGTGGTTCTTCCAACACTGTCAAATGCACTAACTGTGGCACTCAAATGCTGTATGATTCTTCTACAAGATTGATTACTTTACCAGAAGGAAGCTCAAAGATGGCTTCCAATATCCTTCGCTTTGGTAGCTTCTTGTTACTTTCATTGATCCTCGTAGTCGTCGGAAACCCAGCAGCCGCCGCCGGAGTGTTCCGACCAAAACCATGGGCTCTTGCTCACGCCACCTTTTACGGTGACGAAACAGCTTCTGCCACAATGGGAGGAGCATGTGGGTACGGGAACTTATTCACGAACGGGTACGGCACAGACACAGTAGCACTGAGTTCAACACTCTTCAACAATGGCTTCGCTTGTGGAACATGTTACCAAATCAAATGCTACCAATCAAGTGCCTGTCACAAAGACGTCATGTTCACCACCGTGACCGCCACCAACCTCTGTCCACCAAACTGGGCCCAACCCTCCGACAACGGCGGCTGGTGCAACCCACCACGCGTACATTTCGACATGTCAAAGCCAGCATTCATGAAAATAGCAGACTGGAAGGCCGGTATTGTGCCGGTCGTGTACCGGCGAGTTCCATGCGGGAGAAATGGCGGGCTGAGATTCGCGTTCCAAGGGAATGGATATTGGCTACTTGTGTATGTGATGAATGTGGGAGGAGGAGGAGATATTTGGAGCATGTGGGTGAAAGGTAGCAGAACGGGTTGGATAAGTATGAGCCATAACTGGGGAGCTTCGTATCAGGCTTTTGCGACTTTAAGTGGACAAGCTTTGTCGTTTAAGATAGCATCGTACACAACCAAACAGACTGTTATTGCTTGGAATGTTGCTCCTTCTAGTTGGTGTGTTGGGCTTACTTATTCCTCTAACGTTAACTTTCGCTGA 1797 0.4636 MATHKFSFTLTCPRPSIVPNPRPSILISLLSSPDASGGVHLIQFNGRRYFCLRRRGRVFKAAADQQGVTPPPPPPSGKVEEDEEGVDGKILPYCSIDKKEKKSVGELEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILNDKEFDDLKLRLKIEGSEIVAEGPRCSLRSRKVYSDLSIDYLKMLSLNVPATVVSLGLFFFVDDLTGFEIKNLIEIPEPFSFILTWFAAVPFILWLAQALTNAVVKDSLILKGPCPNCGTENTSFFGTILSISSGGSSNTVKCTNCGTQMLYDSSTRLITLPEGSSKMASNILRFGSFLLLSLILVVVGNPAAAAGVFRPKPWALAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTLFNNGFACGTCYQIKCYQSSACHKDVMFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMSKPAFMKIADWKAGIVPVVYRRVPCGRNGGLRFAFQGNGYWLLVYVMNVGGGGDIWSMWVKGSRTGWISMSHNWGASYQAFATLSGQALSFKIASYTTKQTVIAWNVAPSSWCVGLTYSSNVNFR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1014 598 SUPERFAMILY Barwin-like endoglucanases 371 521 IPR036908 -
Lele56g1014 598 Gene3D - 358 498 IPR036908 -
Lele56g1014 598 Pfam Expansin C-terminal domain 505 582 IPR007117 -
Lele56g1014 598 SUPERFAMILY PHL pollen allergen 500 593 IPR036749 -
Lele56g1014 598 SMART dpbb_1 407 493 IPR007112 -
Lele56g1014 598 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 41 335 IPR039987 GO:0009535|GO:0009773|GO:0016730
Lele56g1014 598 PRINTS Expansin signature 402 416 IPR002963 GO:0009664
Lele56g1014 598 PRINTS Expansin signature 514 535 IPR002963 GO:0009664
Lele56g1014 598 PRINTS Expansin signature 478 491 IPR002963 GO:0009664
Lele56g1014 598 PRINTS Expansin signature 461 478 IPR002963 GO:0009664
Lele56g1014 598 PRINTS Expansin signature 579 595 IPR002963 GO:0009664
Lele56g1014 598 PRINTS Expansin signature 442 452 IPR002963 GO:0009664
Lele56g1014 598 PRINTS Expansin signature 502 514 IPR002963 GO:0009664
Lele56g1014 598 PRINTS Expansin/Lol pI family signature 486 502 IPR007118 GO:0005576
Lele56g1014 598 PRINTS Expansin/Lol pI family signature 540 554 IPR007118 GO:0005576
Lele56g1014 598 PRINTS Expansin/Lol pI family signature 389 407 IPR007118 GO:0005576
Lele56g1014 598 PRINTS Expansin/Lol pI family signature 371 386 IPR007118 GO:0005576
Lele56g1014 598 PRINTS Expansin/Lol pI family signature 579 593 IPR007118 GO:0005576
Lele56g1014 598 PRINTS Expansin/Lol pI family signature 411 429 IPR007118 GO:0005576
Lele56g1014 598 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 513 593 IPR007117 -
Lele56g1014 598 Pfam Lytic transglycolase 407 493 IPR009009 -
Lele56g1014 598 Gene3D - 499 598 IPR036749 -
Lele56g1014 598 MobiDBLite consensus disorder prediction 62 85 - -
Lele56g1014 598 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 390 503 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1014 Lele-ChrLele56 13128767 13142675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1014 349 598 Expansin Gene Family AT1G12560 66.135 6.25e-121 357