Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1006 ATGTGTGTGCCTCTAAGCTCTAATCCCCGTAGGGTGGTCCTCACTCTAATCCTTAACCACTTTCCTCCCTCAATTCATTCTCTGCTTTTGTATTTTGGCTTCTCCTTTTTGGCCTTTTGTATCGGAGAAATGCAAGAAGCTGGATTGGGAATTTTGGGCGGTGGGGGTTTTAGTGGAGAATTTTCGCCGTCCGGTGAGTTACTACGGCAGCTGAAGGCGGAGATTGCGGTGCATCCTCTTTGTGAGCAGCTTGTGGCGGCACATGTCGGTTGCCTCCGTGTCGCCACTCCGATCGATCAGCTTCCTCTCATCGACGCTCAGTTATCTCAGTCTCATCAGCTTTTTCGTTCTTATGCGTCGCTTCATACTCATTCCCTTTCACCTCAAGATCGCCAAGAACTCGATAACTTCCTGGCGCAATATTTGGTAGTGATGTGTAGCTTTAAAGAACAGCTTCAGCAGCATGTCAGAATTCATGCAGTGGAGGCTGTCATGGCTTGTCGTGATATTGAAAATACCTTACAAGCTCTCACAGGAGTGACTTTGGGAGAAGGAAGTGGGGCAACAATGTCAGACGATGAAGACGAGTTGGCGATGGATTTCTCAATGGATCAGTGTGGCCTTGAAGGGCATGACATGATGGGTTTTGGTCCATTACTTCCTACAGAATCTGAAAGGTCCCTAATGGAAAGAGTTCGTCAGGAACTAAAGATAGAGCTGAAGCAGGGATTTAAGTCAAGAATTGAAGATGTGAGAGAGGAAATTCTAAGGAAAAGAAGAGCTGGGAAATTACCAGGTGACACAACTTCAGTTTTAAAGAATTGGTGGCAACAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCGAAACTAGTGGAAGAGACAGGGTTGCAGCTGAAGCAGATTAATAACTGGTTCATCAACCAAAGAAAACGAAACTGGCACAACAACTCTCAGTCTGTAACTTCTTTGAAGTCCAAGCGCAAGCGGTAG 999 0.4625 MCVPLSSNPRRVVLTLILNHFPPSIHSLLLYFGFSFLAFCIGEMQEAGLGILGGGGFSGEFSPSGELLRQLKAEIAVHPLCEQLVAAHVGCLRVATPIDQLPLIDAQLSQSHQLFRSYASLHTHSLSPQDRQELDNFLAQYLVVMCSFKEQLQQHVRIHAVEAVMACRDIENTLQALTGVTLGEGSGATMSDDEDELAMDFSMDQCGLEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQSVTSLKSKRKR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1006 332 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677
Lele56g1006 332 SMART KNOX2_2 124 179 IPR005541 GO:0003677|GO:0005634
Lele56g1006 332 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
Lele56g1006 332 SMART HOX_1 257 322 IPR001356 GO:0003677
Lele56g1006 332 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Lele56g1006 332 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 116 318 - -
Lele56g1006 332 CDD homeodomain 258 319 IPR001356 GO:0003677
Lele56g1006 332 Gene3D - 254 328 - -
Lele56g1006 332 SMART KNOX1_2 69 113 IPR005540 GO:0003677|GO:0005634
Lele56g1006 332 SUPERFAMILY Homeodomain-like 257 322 IPR009057 -
Lele56g1006 332 FunFam homeobox protein knotted-1-like 3 isoform X1 256 317 - -
Lele56g1006 332 Pfam KNOX1 domain 71 112 IPR005540 GO:0003677|GO:0005634
Lele56g1006 332 Pfam KNOX2 domain 128 178 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1006 Lele-ChrLele56 12799960 12805850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1006 44 331 Homeobox Transcription Factor Family AT1G62990 78.767 4.38e-169 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele56g1006 KNOX2 1.7e-17 No_clan