Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0983 ATGGCTTGCGGAAGCGAGCGACTGGAGAAGGACGACGACGAGCCTTCACTGCCGCAGTTTCGCCAGTCTGAGAAGCAAGAAGAGGCCATAGAACAGGAAGAATTTTCCAAGAATCGGCCTTCGGCGGAACGAGGGAAAATTGACCCATTAACGGAAGGCACCGAAGTTGTCAAGAAAAGCAGCGGCAGAAAGCGTAAGTCAGAGACGGAGGCCTCAGAAAATGAGGTTATGGCGGAGGCGACGAGGCGTAGTGCTAGAGCATCGCAGAAATCGTACTGTAATGTTTTCTTTGACTTTGAAGACGACGAGGAAGAACCTATAAAAAGGAAAAGTGGGAGAAAAGGGAGAGGTCGGAAAAAAACCAAAGTTGCCGCAAATAAAACGTCAGAAATTGAAGAATGTGTAGGAGCCGAGGACAATGGTAATTTAGCTGAAGAGAAGTTAGGACATTTGAAGCAGAGTGATCCTGGGGAAGCTGTGAAGGACTGTGACGTCCTCGAAGAAGAAGTAGAAAGTAGAGATAAGAAAATTTTAAGGCGTAGGAAGGCGGCTCATAACAACGTGAAGGCAGAAGATGGAAAACTTGAAGTATCAGAAAGCAGATCAAATAAAGGTTATAGTTTCAGGGCTTCTAAATCTCGAGTTAATAGGCAGGCAAACAAGCACGATCATAAACAAGCACGATCTGAATGGGTTGAGAAGGTGTCCTTAATGTGCCATCAGTGTCAGAGAAATGATAAGGGGGAGGTTGTTAGGTGTACGATATGTAAGCGGAAAAGATTTTGCATCCCGTGTATTAAGAGTTGGTATCCTCACTTGAGAGAGGAAGATATTGCTGAGAAGTGCCCTGTGTGTCGTGGAAACTGCAATTGCAAAGCATGTCTCAGCTGTAAAAAATTAATTCAAACAATGAAGAAAAAAGAAGAAAAACCAGGACCAACAATTGTCACAAATGAGGAAGGGGAACACTGTAAGTATTTGCTATCAGTGCTTCTTCCACATTTAAGGCAGCTACATGAAGAACAAATGATCGAGAAGGAGATTGAAGCTAAGAGACAAGGCATCTCACTTGCAGAGCTCCAAATAGGAAGGGCAGATTGCACAGATGATGAGCGTGTTTATTGTGACAATTGTAAAACTTCAATTTTTGATTATCACCGAAGCTGTCAAGAATGTTCTTTTGACCTCTGTCTGGTCTGTTGCCATGAGATTCGCCAGGGGCAATTGGTTGGAGGTGCAGAGCCAGTTGAGTCTGAATTTATCAGCCGCGGTCTAAATTATATGCATGGTGAGCCTGACAAGGAGTCAAAAATAACTAAATTAAATGTTGAGAAGAAGACTGAGGATCGTGATTGGTCAAGATCTGGTTTGAAGGTGACAAGTGATGGTAGCGTCCCTTGTCCAAGGGTTCATGGTGGTTGTGGTTTTAGTTATCTTGAACTTCGACGTATATTTCCTGATAACCGGATTTCTGAACTTGTAAAGAAAGCAGAAAATATGACCAAAGTGTATAAGCTTGATGATGCAACACTGACAAGTAACCAATGGTGTTCATGTTTCAACATAGACAGTAACAACAACAATGTTGGAAATGAAAATAGGATGAAGGCTGCTTCTAGGGAAGATCCCAACGTTAATGACAACTATATGTACTGTCCAAGGGCTATAGATTTAGGACCTTTGGATCTGAAGCATTTTCAGTGGCACTGGAGTAAAGGAGAGCCAGTGATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGCGCATTCCGTCAGATGACTAAAATTAATCATGATCAACATTTGGAAGTGAAGGTCCTTGATTGCTTGGATTGGTGTGAGGGAGACATCAATATCCACCAATTCTTTACGGGGTACTCACAAGGTCGAAAAGATTTTGCAATGGGGCCTCAGTTATTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGATTACCGCGTCATTGTGCTGAGTTCATTTCTTCCTTACCATTCAAGGAATTTACAAATCCTCACAAGGGTGGTCTAAACCTTTATTCAAGGTTGCCGGAAAAAAAATATATAAAGCCAGATATTGGTCCAAAGACATATATAGCCTATGGAATTCCTATGGAGCTTGGGCGGGGTGATCCAGTGACAAAGCTTCACTGTGATATGTCTGATGCAGTGAATGTTTTGACTCATACTTTTGAGACGCCCCTTGATGATCCTCTCCTTAAAAGAATAAAGGAGTTAAAAGAACAGCACCTTAAACACGACAGAAAGGAGCTATATTGTCAGGAAGAAGATAATGTTGAAAATGGGAAAACTACAGATTTTGAAAATAAGTTGCCTGGATATGATTCTGTTGAGGGAGGTGCTCTCTGGGATATTTTTAGGAGACAGGATGTCCCTAAACTGCAGGAATACCTTAATAAGCACTTCAGAGAATTCAGGCATGTCAACTGCATTCCGTTGCAGCAGGTCGTTCATCCTATCCATGACCAGACATTTTATTTGACTATGGACCATAAGAGGAAGCTGAAGGAGGAATATGGAATTGAACCATGGACATTTGTTCAGAAACTGGGAGATGCGGTTTTGATTCCTGCCGGTTGTCCACACCAAGTCAGAAATCTTAAGTCATGTATCAAGGTTGCTCTCGATTTCGTGTCACCTGAAAGTGTACATGAGTGTCTTCGTTTGACACAGGAGTTTCGCACACTTCCCATAAATCACAGGGCTATTGAAGACAAATTGGAGGTCAAAAAAATGCTCATTCATGCCGTGAGTGAAGTAGTGAAGGAATTGGAGCTATCAAGAAGTCAGGAGTCGCAAAATCAGGGGCACAGCCTACAAAGGTGTGACACTGCATGCTCCGAAGCGCTGGCATACCGTCACTGGCAAGGGGCTCTGCGCTGTTATGTGGTTCTGGCTATTGTACCGGGCAAAGCAAGATGGTCCTGTAGTATTGTCATCCATTGGGTTGGAGACATCCTTGGGAGGGTCATGATGATCGTGACCATGGACATCAAAATTAGAAGCGTTAACATGGAGATCATGCAAGAGACAAGCTGCATATCTAATACAAATGTTCACTTTGTTCAATTCCTCGCATAA 3135 0.4278 MACGSERLEKDDDEPSLPQFRQSEKQEEAIEQEEFSKNRPSAERGKIDPLTEGTEVVKKSSGRKRKSETEASENEVMAEATRRSARASQKSYCNVFFDFEDDEEEPIKRKSGRKGRGRKKTKVAANKTSEIEECVGAEDNGNLAEEKLGHLKQSDPGEAVKDCDVLEEEVESRDKKILRRRKAAHNNVKAEDGKLEVSESRSNKGYSFRASKSRVNRQANKHDHKQARSEWVEKVSLMCHQCQRNDKGEVVRCTICKRKRFCIPCIKSWYPHLREEDIAEKCPVCRGNCNCKACLSCKKLIQTMKKKEEKPGPTIVTNEEGEHCKYLLSVLLPHLRQLHEEQMIEKEIEAKRQGISLAELQIGRADCTDDERVYCDNCKTSIFDYHRSCQECSFDLCLVCCHEIRQGQLVGGAEPVESEFISRGLNYMHGEPDKESKITKLNVEKKTEDRDWSRSGLKVTSDGSVPCPRVHGGCGFSYLELRRIFPDNRISELVKKAENMTKVYKLDDATLTSNQWCSCFNIDSNNNNVGNENRMKAASREDPNVNDNYMYCPRAIDLGPLDLKHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQMTKINHDQHLEVKVLDCLDWCEGDINIHQFFTGYSQGRKDFAMGPQLLKLKDWPPSNLFEERLPRHCAEFISSLPFKEFTNPHKGGLNLYSRLPEKKYIKPDIGPKTYIAYGIPMELGRGDPVTKLHCDMSDAVNVLTHTFETPLDDPLLKRIKELKEQHLKHDRKELYCQEEDNVENGKTTDFENKLPGYDSVEGGALWDIFRRQDVPKLQEYLNKHFREFRHVNCIPLQQVVHPIHDQTFYLTMDHKRKLKEEYGIEPWTFVQKLGDAVLIPAGCPHQVRNLKSCIKVALDFVSPESVHECLRLTQEFRTLPINHRAIEDKLEVKKMLIHAVSEVVKELELSRSQESQNQGHSLQRCDTACSEALAYRHWQGALRCYVVLAIVPGKARWSCSIVIHWVGDILGRVMMIVTMDIKIRSVNMEIMQETSCISNTNVHFVQFLA 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0983 1044 ProSiteProfiles JmjC domain profile. 683 912 IPR003347 -
Lele56g0983 1044 MobiDBLite consensus disorder prediction 1 89 - -
Lele56g0983 1044 MobiDBLite consensus disorder prediction 103 126 - -
Lele56g0983 1044 ProSiteProfiles Zinc finger RING-type profile. 239 286 IPR001841 -
Lele56g0983 1044 MobiDBLite consensus disorder prediction 200 214 - -
Lele56g0983 1044 SUPERFAMILY Clavaminate synthase-like 559 942 - -
Lele56g0983 1044 MobiDBLite consensus disorder prediction 191 227 - -
Lele56g0983 1044 Gene3D Cupin 556 921 - -
Lele56g0983 1044 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 37 947 IPR045109 GO:0032454|GO:0033169
Lele56g0983 1044 MobiDBLite consensus disorder prediction 1 80 - -
Lele56g0983 1044 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 235 305 IPR018866 -
Lele56g0983 1044 FunFam Transcription factor jumonji domain-containing protein 547 921 - -
Lele56g0983 1044 Pfam JmjC domain, hydroxylase 799 895 IPR003347 -
Lele56g0983 1044 SMART cupin_9 664 912 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0983 Lele-ChrLele56 11256881 11270426 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele56g0983 JmjC 1e-14 CL0029