Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0962 ATGTTCGCTTTTCTGAATGGTGGATTCAAAATTACACAGAAACGCAGAAATCTCTATCTTCCTTTCAATGGTAATGCGATACCAATTACCATTACTAAGCACTGGGAACATCTTTGTGAGTGTAAAACTGTAAAACTACGTCTTCTCTATCGTCACTCACTAGCAGAATTGTATGACTTGGTACTTTCTGTGGACAATTATACTTCTGAGGACAGAGCACTGGATAGTAATATAAGAAAGAATTCATGTCCGGGTACTTTAACCAAAAAGGTAAAAGGCGGTTCTATTACCTTCTCACAGCTTGCTGCACAGTGTCTTCTGCGATCTAGTGAGATTCTTCAGAATCCTTATTCAAGTAATGCTTTTGTTTCTGCACTAAGGGAAGCTGAACAGTTTCTTTGGGCTGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAATTTGATCGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTTTAAGAAAAATTGAAGCCTGGTTGTGTGATCAGGACTCTGACATTGAGAAAGTTCACTTACATTTTGTTGATGAGCTGCTAACATTAAATTCTGCACCATGCAATGAGCCTGCTTATCATATATTGAAGATCTCTGAGTTGGAATCTCTATATTCTAGAGCTTGTGGCTCTCCAATCTATGTGAAAGATGTGAAGGATTTGGGAAGGAAAATTTCTTCTGCTAAGGCATGGCTGCATAGAGCTAGAAGCTGCATCTCAATAAAACATTCTGCTGCAATAGAGTTTGATGTTCTCTTCAAGTTGAAGTCGGAGATTATGGAGCTTCAAGTACAACTTCCAGAGATAGAAGTAATTCAGAATATATTAAGTCAAGCAGAATCTTGTAGTTCAAAATGCAGTGAGATATTACAAGGTCCCATGAATCTAAAGAATGTCAATTTGCTGCTTAAGGAATGGGGCAGCTTTATGGTTGATGTACCAGAACTGAAGCTTCTGAGGCAATATCATAAGGATCCTGTTTCATGGGTTTCCAACTTTAACTGTGTATTAGGGACAACACATGAACGGGAGGATCAACATAATGTTGTTGAGGAATTGAAGCATATTTTAGACGATGGTTTATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGACTGAGCTGCAGAAAGCTCTTTGTCGGGAAAAGGCTCAAAAGGCATAATTATTGAAATTGGCACAGGCACATAAATCTAGGATGTCTCTGGACTTGGTTCAAGAAGTGATGAAGGAGGCCAGACTGCTACAAATTGAGGGAGAGAAATTCTTTGTTGGTTTATCTGGTGTACTTGCTGTTGCCATACCTTGGGAAGAAAGGGCTAAACAGATTCTTTCACACAAGGCTTCCTTCTCTGACTTTGAGGACATGACCAGGACCTCAGAAACCATATTTATGATTCTTCCTTCCCTTAATGATGTAAAGGAAGCACTATTGGAGGCTAATTCATGGTTAATGAATTCAAAACCATTCTTGGTTTCTTCTACTTGCCCATCAGATTCTCTACGGAAAGTTGAGGACCTTCAGATGTTGGTTTCTCAGTCAAAGCTTCTTAAAATATCTTTTGAAGAAATAAGGATGCTTGAAATAGTTTTGCATAAATGCAAAGAATGGGAGTCCGAGGCATGTTCTGTATTGGAAGATGCCTGGCACATTTTTGAATTGAATGACATTGTTCATGGAATAAGCAGTGGCCTAATGTCCAAAGTTGAAGGTTTGATTGCCAGAATGCAGTCTACCACAAGATCTGGTTTATTGCTTGGTTTTGACTTTGCGGAGATTCCAAAACTTAAAGCAACCTGTTCAACACTGCTGTGGTGTAAAAAGATTCTTTCCTTCTGCAATCTTTTTCCTTCTTTAGAGGATGTTTTGGAGACTACAGAACACCTTCCTCATTCGTGTGGTTCTGGGGCGCTATTGAATCTACTGATTGGTGGAGTCAAATGGCTTAGGCAAGCATTGGAAGTAATTTCTGGACCTCGCAATTTTAAAAGAAGCAAGGCAAGTGAAGTTGAAGAAATTATTAGAGATTACCAGCTTGCTCTGCAATTTTCTTACCTGCAGACTATTAATATTCCTTTTGTAGCAGTAATCTACCAACTTGAAGAAGCCATAGGAAAACATAGGTTGTGGCAAAAACAGGCGCATCAATTCCTTAGCCTTTGTTCTGGGGAACGGTCTTGGTTATCAATGTTGAAACTCAAGGAACAAGGTGATACTGTTGCTTTCAGCTGCCCAGAACTGCATTTGATTTTATCTGAAGTTGAGAAGGTGGAGAATTGGAAGAAACACTGCATGAATTTTGTAGGAACTTTAGTCCGAAATGAGAATTCACTTCTTTATGCTCTGCAGAAGATGAAACAGAGTCTAGATAGATCATTGTCCATATATGGCAAGTTGAAAGGCTGCAAAGAAGAATGTTTATGCATCTACTGCTTTACTGATTCTGAAGATCGGGAATTTCTTACTTGCTCCACTTGTAGAAACTGCTATCATATACTGTGTATTGGACCATTGGTGGACAATAATCATGGAAATTATACATGCCCTTCCTGTAAAATACTGAAGGGTGAATCCAATTATAAGAAGGGAACTCTCCTTGTGAGGTTTGGGGAGGAGCGTGCTGAACTAAAAGTTCTTCTTGAACTCCTTTCTGATGCTAAAAATTTGTGTATAAGGATTGACGAGACAGATGCTCTCAACCAACTTGTTGAGCAATCACTTCTATGCAGATCTTGCTTGAGAGAAATAGTGAACTTTACATCAGCTAATGTAGACAATGATCTTGGTATCATCTCTGAAAGATTGACCATAGCCATAAAGGCTTGTGAAGTTGCTGGTGTCTGTGATCATCAAGATGTACATGACCTTGAGTTGGCATTAGCAAGACACCTTTGGAAAGTTCAAGTCAATGGAATGCTAAATAGTTTACAAAATCCTTCTATCCAAGATATACAGAAGCATCTGAGAGAGGGACTGGCTCTGGAAATATCACCTGAAGATCATTTCATGCTGCAACTGGCAAAAATGACTTGCTTATATTTGCAGTGGGCAGAACTAATCAAGAAGGTTGCAGTTGATTCTGGGGCGCTCAGCCTAGATAAAGTTTTTGAACTCATTGCAGAAGGTGAAAACTTACCTGTTAATGTGGAAGAGGATCTCAGGATTTTAAGGGCTCGAAGTATGCTTTATTGCATTTGTCGAAAGCCATTTGATCCAGGGAGGATGATTGCATGTAATCAGTGTGGTGAGTGGTATCACTTGGATTGCATGAAATTACCATACAGTCAAGAGTTCTACATTTGTCCTGCATGTAACCCCTCTACAGCAGGAATGCCAACATCTCTGGATCATGAGAGATTAACTGGCGGTAAATTGGAGGAACCTAAAACACCATCTCCAAGGCATACGAATCCAAGAAAGAAACAGAAGAGAGATGAGGCAATGTGTGGAAGCGAGGATCAAATTCAAATTAATAATTTGGGGAATCTGAGTGGGATAGAATGTCTTAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCGGCTAAGAAACGTGTTGACCTTCGGAGTCTTTCTTCCTTTCTATGTATACACAACACTAACTGA 3633 0.395 MFAFLNGGFKITQKRRNLYLPFNGNAIPITITKHWEHLCECKTVKLRLLYRHSLAELYDLVLSVDNYTSEDRALDSNIRKNSCPGTLTKKVKGGSITFSQLAAQCLLRSSEILQNPYSSNAFVSALREAEQFLWAGPEMNSVRDMVKNLIEAQKWAEGIRDCLRKIEAWLCDQDSDIEKVHLHFVDELLTLNSAPCNEPAYHILKISELESLYSRACGSPIYVKDVKDLGRKISSAKAWLHRARSCISIKHSAAIEFDVLFKLKSEIMELQVQLPEIEVIQNILSQAESCSSKCSEILQGPMNLKNVNLLLKEWGSFMVDVPELKLLRQYHKDPVSWVSNFNCVLGTTHEREDQHNVVEELKHILDDGLSLKIQVDELPLVETELQKALCREKAQKAXLLKLAQAHKSRMSLDLVQEVMKEARLLQIEGEKFFVGLSGVLAVAIPWEERAKQILSHKASFSDFEDMTRTSETIFMILPSLNDVKEALLEANSWLMNSKPFLVSSTCPSDSLRKVEDLQMLVSQSKLLKISFEEIRMLEIVLHKCKEWESEACSVLEDAWHIFELNDIVHGISSGLMSKVEGLIARMQSTTRSGLLLGFDFAEIPKLKATCSTLLWCKKILSFCNLFPSLEDVLETTEHLPHSCGSGALLNLLIGGVKWLRQALEVISGPRNFKRSKASEVEEIIRDYQLALQFSYLQTINIPFVAVIYQLEEAIGKHRLWQKQAHQFLSLCSGERSWLSMLKLKEQGDTVAFSCPELHLILSEVEKVENWKKHCMNFVGTLVRNENSLLYALQKMKQSLDRSLSIYGKLKGCKEECLCIYCFTDSEDREFLTCSTCRNCYHILCIGPLVDNNHGNYTCPSCKILKGESNYKKGTLLVRFGEERAELKVLLELLSDAKNLCIRIDETDALNQLVEQSLLCRSCLREIVNFTSANVDNDLGIISERLTIAIKACEVAGVCDHQDVHDLELALARHLWKVQVNGMLNSLQNPSIQDIQKHLREGLALEISPEDHFMLQLAKMTCLYLQWAELIKKVAVDSGALSLDKVFELIAEGENLPVNVEEDLRILRARSMLYCICRKPFDPGRMIACNQCGEWYHLDCMKLPYSQEFYICPACNPSTAGMPTSLDHERLTGGKLEEPKTPSPRHTNPRKKQKRDEAMCGSEDQIQINNLGNLSGIECLRWQNRKPFRRAAKKRVDLRSLSSFLCIHNTN 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0962 1210 MobiDBLite consensus disorder prediction 1122 1158 - -
Lele56g0962 1210 ProSiteProfiles Zinc finger PHD-type profile. 815 864 IPR019787 -
Lele56g0962 1210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1059 1116 IPR013083 -
Lele56g0962 1210 ProSiteProfiles Zinc finger RING-type profile. 818 862 IPR001841 -
Lele56g0962 1210 SUPERFAMILY FYVE/PHD zinc finger 814 863 IPR011011 -
Lele56g0962 1210 MobiDBLite consensus disorder prediction 1129 1158 - -
Lele56g0962 1210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 867 IPR013083 -
Lele56g0962 1210 SMART PHD_3 1073 1115 IPR001965 -
Lele56g0962 1210 SMART PHD_3 817 862 IPR001965 -
Lele56g0962 1210 ProSitePatterns Zinc finger PHD-type signature. 1074 1114 IPR019786 -
Lele56g0962 1210 SUPERFAMILY FYVE/PHD zinc finger 1070 1118 IPR011011 -
Lele56g0962 1210 Pfam PHD-finger 1073 1116 IPR019787 -
Lele56g0962 1210 PANTHER CXXC-TYPE ZINC FINGER PROTEIN 1 911 1138 IPR037869 GO:0048188
Lele56g0962 1210 Pfam PLU-1-like protein 205 373 IPR013637 -
Lele56g0962 1210 Pfam PLU-1-like protein 353 494 IPR013637 -
Lele56g0962 1210 Pfam PLU-1-like protein 509 773 IPR013637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0962 Lele-ChrLele56 10551954 10565012 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele56g0962 PLU-1 6.5e-10 No_clan