Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0961 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGGCAGAGTCTTAGTGTTTCATCGTTCCAGTCACTGAATATACCGTCAGGTCCTGTATATTTTCCCACCGAGGATGAGTTCACAGATCCCTTGGAATATATTTATAAGATTAGGCCTAAAGCGGAGCCATATGGAATTTGTAAGATTGTACCACCGAATAGTTGGAAACCGCCATTTGCTTTGGATCTAGATTTTTTTACTTTCCCTACTAAAACACAGGAAATTCACAAGTTACAGGCTCGTCCTGCTGCGTGTGACTCCAGGACTTTTGATTTGGAGTACTCTAGGTTTTTAGAGGATCACTGTGGTAAAAAGTTAAGGAAGAAAATTGTATTTGAAGGGGAAGAATTGGACTTGTGCATACTGTTTAATGCTGTTAAGAGATTTGGTGGATATGATAAGGTTGTGAAGGAAAAGAAATGGGGGGATGTTTCACGGTTTGTAAGACCAGGAAGAAAAATTACAGACTGTGCAAAGCATGTCCTATCACAATTTTACTGTGAACATTTGTATGATTATGAGAATTTCTCTAATCAGCTGAATCAAGAGACAGGTAAGAAAGGCATGCTTGAGGGTGATAAAAGTGATCATGGTGTTCGATCTTCAGGATCCAAGAGGATGAGAAGAAGTTCTGATTGTTTGAAATTTAAGGATTGTAAAGTGCAGGAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGTTTGCATGGGGACGTGATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATATATTGTCTCTCACCACCCTTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGTAAGCAGTACACCTTGGAAACCTTTAGACGTGTGGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCAAGGGTACAAATAGAGAAGAAATTTTGGGAGATTGTAGAGGGATCAGTTGGTGAGGTCGAGGTTATGTATGGAAGTGATTTGGATACATCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGTTCAGAAACCAGAATCCATTGATCCAAAATTATGGGATGAATACACATCTAACCCATGGAATCTTAACAATTTGCCTAAATTGAAAGGGTCAATGCTTCGAGCTGTTCATCATAATATCACAGGGGTGATGGCCCAAAACACGAAGAAAGGCTTAGAAGTTGGAACTTCTAAGGTCTTATGGCATCAGGACAGTGAAAAGTCTGATTGGATTGGAAAGTGGAATGTATATAGGAGGCAAATGATTGTAGTTTTCTTACAAATCCTGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCTGGTGCTTTTGAGAAAGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCGCAACCAGATCTTCTTTTTCAGCTTGTAACTATGTTAAACCCATCTGTTTTGCAAGAAAATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTTATTACCTTTCCCAGATCTTACCATGGAGGTTTTAATCTTGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGGTCTCTACCAGCGATATCACAAAGCTGCTGTGTTGTCTCATGAGGAGCTTCTTTGCGTAGTAACCCAGAATGCCATGTTAATAGATAAGAAGAGACTTTCTGAAGATTGGTTTTTGTTACTTCCCAAAACATATTTCAGTGACATTGATGCCAGAGCGGCTCCTTATTTGAAGAAAGAATTGCTTCGAATATCTTATAAAGAGAAATCTTGGAGAGAAAAGCTCTGGAAAAATGGTATTGTCAAAACATCTCGCATGACTCCTCGCCGATGTCCTCAATATTTGGGAACTGAAGAGGTATGGATCCATCATGCATTATTTGCCAGCAATATCTATATCTTTCTGCTGTTGTGTGCAGTTGCAGGCCATCTTCTTTGTTCTGCATCTCAACAGTTTCAAGACCTTTACTGGAGAAAACCAATTATACATAAGCATCAATAG 2100 0.409 MGKGRPRAVEKGVAGQSLSVSSFQSLNIPSGPVYFPTEDEFTDPLEYIYKIRPKAEPYGICKIVPPNSWKPPFALDLDFFTFPTKTQEIHKLQARPAACDSRTFDLEYSRFLEDHCGKKLRKKIVFEGEELDLCILFNAVKRFGGYDKVVKEKKWGDVSRFVRPGRKITDCAKHVLSQFYCEHLYDYENFSNQLNQETGKKGMLEGDKSDHGVRSSGSKRMRRSSDCLKFKDCKVQEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYTLETFRRVADRSRRRWFGPGPVSRVQIEKKFWEIVEGSVGEVEVMYGSDLDTSVFGSGFPRSTVQKPESIDPKLWDEYTSNPWNLNNLPKLKGSMLRAVHHNITGVMAQNTKKGLEVGTSKVLWHQDSEKSDWIGKWNVYRRQMIVVFLQILGEPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSIIQEPGNFVITFPRSYHGGFNLEAVNFAPADWLPYGAFGAGLYQRYHKAAVLSHEELLCVVTQNAMLIDKKRLSEDWFLLLPKTYFSDIDARAAPYLKKELLRISYKEKSWREKLWKNGIVKTSRMTPRRCPQYLGTEEVWIHHALFASNIYIFLLLCAVAGHLLCSASQQFQDLYWRKPIIHKHQ 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0961 699 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Lele56g0961 699 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Lele56g0961 699 ProSiteProfiles JmjC domain profile. 381 557 IPR003347 -
Lele56g0961 699 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Lele56g0961 699 SMART bright_3 99 193 IPR001606 GO:0003677
Lele56g0961 699 SMART cupin_9 381 557 IPR003347 -
Lele56g0961 699 SUPERFAMILY Clavaminate synthase-like 445 583 - -
Lele56g0961 699 SMART ARID_2 95 188 - -
Lele56g0961 699 SMART JmjN_1 30 71 IPR003349 -
Lele56g0961 699 CDD PHD_RSF1 244 288 - -
Lele56g0961 699 Gene3D Cupin 13 123 - -
Lele56g0961 699 MobiDBLite consensus disorder prediction 201 219 - -
Lele56g0961 699 SMART PHD_3 243 289 IPR001965 -
Lele56g0961 699 Pfam JmjC domain, hydroxylase 449 536 IPR003347 -
Lele56g0961 699 Pfam PHD-finger 243 290 IPR019787 -
Lele56g0961 699 Gene3D Cupin 270 563 - -
Lele56g0961 699 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Lele56g0961 699 MobiDBLite consensus disorder prediction 200 219 - -
Lele56g0961 699 Pfam ARID/BRIGHT DNA binding domain 118 188 IPR001606 GO:0003677
Lele56g0961 699 Pfam jmjN domain 32 65 IPR003349 -
Lele56g0961 699 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 645 - -
Lele56g0961 699 CDD ARID 100 188 - -
Lele56g0961 699 SUPERFAMILY ARID-like 81 196 IPR036431 GO:0003677
Lele56g0961 699 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Lele56g0961 699 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0961 Lele-ChrLele56 10529461 10540683 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0961 27 95 JUMONJI Transcription Factor Family AT2G34880 49.315 5.94e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele56g0961 JmjC 3.6e-23 CL0029