Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0958 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGGCAGAGTCTTAGTGCTTCATCGTCCCGGTCACTGAACACACCGTTTTTAGAGGATCACTGTGGTAAAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAAATGGGCTTGTGTATACAGTTTAATGCTGTTAATAGATTTGGTGGATATGATAAGGTTGTGAAGGAAAAGAAATGGGGGAATGTTTCACGGTTTGTAAGGCCGGGAAGAAAAATTACAGACTGTGCAAAGCATGTCCTATCACAATTGTACCGTGAACATTTGTATGATTATGAGAATTTCTATAATCAGCTGAATCAAGAGACAGGTAAGAAAGGCATGCTTGAGGGTGATAAAAGTGATAATGGTGTTCGATCATCAGGATCCAAGAGGATGAGAAGAAGTTCTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAAGAGGAAGAACATGGCCAGATTTGTGAGCAATATAGAAGTGGTTTGCGTGGGGACGTGATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATATACTGTCTCTCACCACACTTGAAGCAAATTCCTCGAGGAAACTGTTATTGCTTTAATTGCTTGAATTCTGATAGGTACAGCTTTGGTTTTGTGCCGGGTAAGCAGTACACCTTGGAAACCTTTAAACGTGTGGCTGATCGGTCAAGAAGGAGATGGTTTGGACCAGGACCTGTTTCAAGGGCGCAAATAGAGAATAAATTTTGGGAGACTAGAATAAATTTTGGTTTGGACCAGGAGATGGTTTGTCTGTAA 813 0.4133 MGKGRPRAVEKGVAGQSLSASSSRSLNTPFLEDHCGKKSRKKIVFEGEEMGLCIQFNAVNRFGGYDKVVKEKKWGNVSRFVRPGRKITDCAKHVLSQLYREHLYDYENFYNQLNQETGKKGMLEGDKSDNGVRSSGSKRMRRSSDCLKVKDCKVQEEEHGQICEQYRSGLRGDVMLLCDRCDKGWHIYCLSPHLKQIPRGNCYCFNCLNSDRYSFGFVPGKQYTLETFKRVADRSRRRWFGPGPVSRAQIENKFWETRINFGLDQEMVCL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0958 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 215 IPR013083 -
Lele56g0958 270 SUPERFAMILY ARID-like 40 115 IPR036431 GO:0003677
Lele56g0958 270 SMART PHD_3 162 208 IPR001965 -
Lele56g0958 270 PANTHER OS02G0192300 PROTEIN 176 209 - -
Lele56g0958 270 SUPERFAMILY FYVE/PHD zinc finger 161 212 IPR011011 -
Lele56g0958 270 ProSiteProfiles ARID domain profile. 17 111 IPR001606 GO:0003677
Lele56g0958 270 SMART bright_3 17 112 IPR001606 GO:0003677
Lele56g0958 270 CDD ARID 30 107 - -
Lele56g0958 270 Pfam ARID/BRIGHT DNA binding domain 41 107 IPR001606 GO:0003677
Lele56g0958 270 Gene3D - 25 109 IPR036431 GO:0003677
Lele56g0958 270 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0958 Lele-ChrLele56 10346453 10347592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0958 173 251 C2H2 Transcription Factor Family AT3G01460 40.506 6.70e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele56g0958 ARID 1.1e-06 CL0123