Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0942 ATGTCGTTCATCGGGACCCAACAGAAATGTAAGGCTTGTGATAAAACTGCTCATTTTGTGGATTCTGTTTCAGCAGATGGAGTTATTTATCATAAGACTTGCTTCAAATGCAGTCAGTGCAACGGCGTCCTAGCGATTAGCACGTACTCTTCGGTGGATGGAGTGTTGTACTGCAAGCCTCATTTTGAGCAGCTTTTCAAGAGCACTGGCGGTCTCACCAGGAGATCCCTATCAACTGGAAAGAGTGAGCTGACAAGGGCACCAAGCAAATTGTCGGCCATGTTCTCTGGAACTGTAGACAAATGCTCTTCTTGCAAGAAAACCGTCTACCCACTTGAAAAGGTAACCGTAGAAGGAGAATTCTTTCACAAATCATGCTTCAGGTGTGCTCAAGGAGGCTGTTTTCTGAGCCCATCCAACTATGCGGCACTTGATGGGTTTTTATACTGTAAGCACCATTTTGCTCAGTTGTTCAAGGAGAAAGGATGCTATTCCCACGTGTCCAAATCTTCTTCCATGAAGAAGAACAACGAAACTCAAAAGGTTGAAGCTGATTCTGCAGAGGCTCCTCCTCCTCCTCCGGCAAACCATGATGATGAACAACACGCCGTTTCTGAGTAG 621 0.4573 MSFIGTQQKCKACDKTAHFVDSVSADGVIYHKTCFKCSQCNGVLAISTYSSVDGVLYCKPHFEQLFKSTGGLTRRSLSTGKSELTRAPSKLSAMFSGTVDKCSSCKKTVYPLEKVTVEGEFFHKSCFRCAQGGCFLSPSNYAALDGFLYCKHHFAQLFKEKGCYSHVSKSSSMKKNNETQKVEADSAEAPPPPPANHDDEQHAVSE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0942 206 PANTHER OS06G0237300 PROTEIN 88 191 IPR045268 -
Lele56g0942 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 72 - -
Lele56g0942 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 167 - -
Lele56g0942 206 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Lele56g0942 206 MobiDBLite consensus disorder prediction 169 206 - -
Lele56g0942 206 Gene3D Cysteine Rich Protein 97 166 - -
Lele56g0942 206 Gene3D Cysteine Rich Protein 4 73 - -
Lele56g0942 206 FunFam LIM domain and actin-binding 1 96 166 - -
Lele56g0942 206 SMART lim_4 9 61 IPR001781 -
Lele56g0942 206 SMART lim_4 101 153 IPR001781 -
Lele56g0942 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lele56g0942 206 Pfam LIM domain 10 65 IPR001781 -
Lele56g0942 206 Pfam LIM domain 102 157 IPR001781 -
Lele56g0942 206 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lele56g0942 206 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lele56g0942 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 127 - -
Lele56g0942 206 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0942 Lele-ChrLele56 9471920 9472915 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele56g0942 LIM 1.6e-11 CL0167