Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0940 ATGAGACAAGCAGGAGCATATTCAGGGCTACATTGCGGGAGAATGGGGCCTCACGCGCTGCCATTGGCGAGGATAAAGAAGATAATGAAGAAATCTTCTTCAGGGGATGACGTCAAGATGATATCAGGTGAGGCTCCTATTGCTTTTGCCAAAGCCTGTGAGCTCTTCATTGAAGAACTCACCAGAAGGTCCTGGATCATCACCACCCACTCAAAGCGGAGGACCCTCCTCAAAGACGACGTAGCTTCCGCGGTCATCGCCACCGATCTCTTCGACTTCTTGATCTCTCTCTTCACCTAA 300 0.5033 MRQAGAYSGLHCGRMGPHALPLARIKKIMKKSSSGDDVKMISGEAPIAFAKACELFIEELTRRSWIITTHSKRRTLLKDDVASAVIATDLFDFLISLFT 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0940 99 SUPERFAMILY Histone-fold 13 94 IPR009072 GO:0046982
Lele56g0940 99 Gene3D Histone, subunit A 9 98 IPR009072 GO:0046982
Lele56g0940 99 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 15 96 - -
Lele56g0940 99 FunFam Nuclear transcription factor Y subunit C 3 99 - -
Lele56g0940 99 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 85 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0940 Lele-ChrLele56 9441523 9441822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0940 18 97 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.500 1.01e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele56g0940 CBFD_NFYB_HMF 1.9e-17 CL0012