Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0929 ATGGACCGTTCCTCTGAGGACATCGTCGATTCAACGCCTTTTCTGGGCAATTCAAGTGGTTCTCCCGATGAATTCAATTCCGGCCGTCGATTTGTGCGGAGACAGAGCCTGCGCCAAGCAGCACGGTTCCTCAGGCAGGCCAGTAGCCGTCGGACGATGCGCGAGCCATCAATGATGGTTAGAGAGACTGCAGCCGAGCAATTAGAAGAGAGACAAAGCGATTGGGCTTATTCCAAACCCGTCGTGATTCTTGATGTTATTTGGAATTTCGCCTTTGTTATTGTCTCCGCTACAGTGTTGGTTATGAGCAGAAATGAATCACCAAGTGTGCCTTTGAGGTTGTGGATTGTGGGTTATGCTATCCAATGTGTCCTTCACATATTCTGTATCTGCGTTGAGTATAGGCGGCGGAGGCGGCAGCAACAAAGTCAATCCCCGCCATCCTTGAACTCAGTGCAAGAAAGGTTTGGCAGCAGTGACAATTCGAGTTCCAGTTCAAGGGAGAATTCTGGGCATTATGAGAGTTTGCCGCAATTCCATGGGGAGGGTACAAGTAGCACTGCAAAGCATCTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATCATTGGATTTTACTGGGTGTCCTCTGGTACTCAAGCTTTAGCCAATGATTCTCCTCAGCTTTACTGGCTATGCATTATTTTCCTGGCTTTTGATGTTTTCTTCGTCATTTTCTGCGTGGCACTGGCAAGCATTATTGGCATTGCGGTTTGTTGTTGTCTTCCATGTATCATTGCTCTTCTTTATGCAGTTGTAGACCAGGAAGGGGCAACAAAACAAGACATCGAGCAGTTGTCAAAATTCAAATTCCGTAGAATAGACAACGAGAAAGTTGTCGGTAGTACACAAGGACCTGTCGGAGGAGTGATGACTGAATGTGGCTCTGGTTTACCCAGGGAACACATTCTTTCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAGGATGGGGTTGAACTGAGAGAACTTCCTTGCGGTCACCATTTTCATTGTGCCTGCGTGGACAAGTGGCTGTATATAAACGCAACTTGCCCCCTTTGCAAGTATAATGTTTTGAAGGGTAGCTTCCGTAGTCAAGAGGAAGTTTAG 1146 0.4677 MDRSSEDIVDSTPFLGNSSGSPDEFNSGRRFVRRQSLRQAARFLRQASSRRTMREPSMMVRETAAEQLEERQSDWAYSKPVVILDVIWNFAFVIVSATVLVMSRNESPSVPLRLWIVGYAIQCVLHIFCICVEYRRRRRQQQSQSPPSLNSVQERFGSSDNSSSSSRENSGHYESLPQFHGEGTSSTAKHLESANTMFSFVWWIIGFYWVSSGTQALANDSPQLYWLCIIFLAFDVFFVIFCVALASIIGIAVCCCLPCIIALLYAVVDQEGATKQDIEQLSKFKFRRIDNEKVVGSTQGPVGGVMTECGSGLPREHILSEEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNVLKGSFRSQEEV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0929 381 SUPERFAMILY RING/U-box 317 371 - -
Lele56g0929 381 MobiDBLite consensus disorder prediction 10 25 - -
Lele56g0929 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 374 IPR013083 -
Lele56g0929 381 FunFam E3 ubiquitin-protein ligase At1g12760 312 377 - -
Lele56g0929 381 Pfam Ring finger domain 325 367 IPR001841 -
Lele56g0929 381 SMART ring_2 326 366 IPR001841 -
Lele56g0929 381 MobiDBLite consensus disorder prediction 142 181 - -
Lele56g0929 381 MobiDBLite consensus disorder prediction 1 27 - -
Lele56g0929 381 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Lele56g0929 381 CDD RING-H2_RNF111_like 325 369 - -
Lele56g0929 381 PANTHER TARGET OF ERK KINASE MPK-1 48 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0929 Lele-ChrLele56 8873886 8884114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0929 11 374 C3H Transcription Factor Family AT1G68070 47.956 4.39e-117 342