Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0904 ATGTTTGAACGTATTTCCTTTCCTTTATGTTGCCACCTTTATAGTTCACTAATGCTGAAGTTTACTAGGCCCGCCTCATTACCCATGCTTACGGGAGTTTGTGATAACTCTTTGGAGTTGAAGTGGGTTAGTGTCAAGTTTTTCTCATCTTCAGATTCTTCGCATTTGGTCCTTGAGATGCCTGCCTTATCCCCCACAATGAGCCAAGGTAATATTGCAAAATGGCAAAAAAAGGAAGGAGATAAGATTGAAGTGGGTGACGTGCTATGTGAAATTGAGACTGATAAAGCTACGCTTGAATTTGAAAGTCTTGAAGAGGGATTTCTGGCTAAGATATTGGTACCGGATGGGTCAACGGATGTGCCTGTGGGACAACCAATTGCAATAACAGTTGAGGATCCAAATGATATCCAAAATGTTCCTGCTTCGGTGGGGTCTGAGGTAGGAGCTAAGGAGAAAAAATCAACCGACCAAGAAGTCACACATGAGGAGCGGACACCAGAGTCAACTTCCACTACAGTAAACACATCTGAACTCCCTCCTCATATCCTTCTTGAAATGCCAGCTTTGTCCCCAACAATGAACCAAGGAAACATTGCTAAATGGATGAAAAAAGAAGGAGACAAGGTAGAAGTGGGAGACATATTATGTGAGATAGAGACAGACAAAGCTACCCTTGAATTCGAGAGTCTTGAAGAGGGATATCTAGCTAAGATATTAGCACCAGATGGTTCAAAGGATGTGGCAGTGGGACAACCTATTGCAATAACAGTTGAAGATGCATCTGATGTTGAAGCTGTAAAGAATTCAGTCAGTAGCAGTTCTGCAAGCCAACAGGAGACAACTCACCATGACACTAGAAGTAAGGGCGGAGCACAGAAGACCAGTGCTAGAAGGATTAGTCCAGCTGCGAAGTTGTTGATCCTAGAACATGGATTGGATGCGTCCTCATTAGAAGCATCTGGTCCTTATGGAACCCTTCTAAAAGGGGATGTTCTTTCTGCTATTAAGTCACGAAAAATATCTCCGAAACCTGCATCTAAGGAAAAGGCACCATCATCTCAAAGTCGTCAACAGGTTGCTGCATCAAAAGACTCTAAGTCTCTTCTAAAGCAGTCAGATGCTTTTGAAGATTTGCCAAATAGCCAAATTCGTAAGGTGATTGCTAAGAGGTTATTGGAGTCTAAACAAAATACACCTCACTTATATTTGTCGTCAGATGTTATACTGGACCCACTTCTTTCCCTTAGAAAAGATCTCAAAGAGCAATATGGTGTTAAAGTTTCCGTGAATGATATTATCATCAAAGTTGTAGCCGCTGCTCTCAAAAGTGTAACAGAAGCAAATGCCTACTGGGATGCTGAGAAGGGTGAGGTTATTTCATGTGAGTCTGTTGACATATCAATTGCCGTGGCTACTGAGAAGGGCTTGATGACACCAATTGTTAGGAATGCTGATCAGAAGACAATATCTTCAATCTCCTCAGAGGTCAAGGAACTAGCTGAAAAGGCACGCTCTGGCAAGCTAATGCCACATGAGTTCCAAGGAGGAACTTTTAGCATTTCAAATTTGGGAATGTTTCCTGTGGATCAGTTCTGTGCTATAACAAATCCCCCACAGGCTGGCATTCTCGCTGTTGGTAGGGGTAACAAAGTTGTGGAACCAGTAATGGGAGCTGATGGAATCGAGAGGCCAGCCGTTGTTACTAAGATGAACTTGACTTTGTCTGCCGATCATCGTGTTTTTGAAGGCGAAGTTGCAGGATCATTTCTTTCAGCTCTGAGGTCAAACTTTAGTGACATAAGAAGACTTCTTTTATAA 1821 0.425 MFERISFPLCCHLYSSLMLKFTRPASLPMLTGVCDNSLELKWVSVKFFSSSDSSHLVLEMPALSPTMSQGNIAKWQKKEGDKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPDGSTDVPVGQPIAITVEDPNDIQNVPASVGSEVGAKEKKSTDQEVTHEERTPESTSTTVNTSELPPHILLEMPALSPTMNQGNIAKWMKKEGDKVEVGDILCEIETDKATLEFESLEEGYLAKILAPDGSKDVAVGQPIAITVEDASDVEAVKNSVSSSSASQQETTHHDTRSKGGAQKTSARRISPAAKLLILEHGLDASSLEASGPYGTLLKGDVLSAIKSRKISPKPASKEKAPSSQSRQQVAASKDSKSLLKQSDAFEDLPNSQIRKVIAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYGVKVSVNDIIIKVVAAALKSVTEANAYWDAEKGEVISCESVDISIAVATEKGLMTPIVRNADQKTISSISSEVKELAEKARSGKLMPHEFQGGTFSISNLGMFPVDQFCAITNPPQAGILAVGRGNKVVEPVMGADGIERPAVVTKMNLTLSADHRVFEGEVAGSFLSALRSNFSDIRRLLL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0904 606 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 51 155 - -
Lele56g0904 606 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 299 336 IPR004167 GO:0016746
Lele56g0904 606 ProSiteProfiles Biotinyl/lipoyl domain profile. 182 258 IPR000089 -
Lele56g0904 606 ProSiteProfiles Biotinyl/lipoyl domain profile. 55 131 IPR000089 -
Lele56g0904 606 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 80 109 IPR003016 -
Lele56g0904 606 MobiDBLite consensus disorder prediction 340 367 - -
Lele56g0904 606 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 376 605 IPR001078 GO:0016746
Lele56g0904 606 SUPERFAMILY Single hybrid motif 56 146 IPR011053 -
Lele56g0904 606 SUPERFAMILY CoA-dependent acyltransferases 376 606 - -
Lele56g0904 606 MobiDBLite consensus disorder prediction 348 367 - -
Lele56g0904 606 MobiDBLite consensus disorder prediction 267 281 - -
Lele56g0904 606 Gene3D - 360 606 IPR023213 -
Lele56g0904 606 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 175 606 IPR045257 GO:0006086|GO:0045254
Lele56g0904 606 Gene3D - 181 282 - -
Lele56g0904 606 Gene3D - 49 156 - -
Lele56g0904 606 CDD lipoyl_domain 187 256 - -
Lele56g0904 606 Pfam e3 binding domain 299 333 IPR004167 GO:0016746
Lele56g0904 606 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 178 282 - -
Lele56g0904 606 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 207 236 IPR003016 -
Lele56g0904 606 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 361 604 - -
Lele56g0904 606 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 295 337 IPR036625 GO:0016746
Lele56g0904 606 MobiDBLite consensus disorder prediction 138 176 - -
Lele56g0904 606 MobiDBLite consensus disorder prediction 150 166 - -
Lele56g0904 606 MobiDBLite consensus disorder prediction 267 298 - -
Lele56g0904 606 Pfam Biotin-requiring enzyme 58 129 IPR000089 -
Lele56g0904 606 Pfam Biotin-requiring enzyme 185 256 IPR000089 -
Lele56g0904 606 SUPERFAMILY Single hybrid motif 182 276 IPR011053 -
Lele56g0904 606 Gene3D - 299 341 IPR036625 GO:0016746
Lele56g0904 606 CDD lipoyl_domain 60 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0904 Lele-ChrLele56 7692298 7720369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0904 177 606 Acyl Lipid Metabolism Gene Families AT1G54220 41.575 1.97e-103 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0023 52 164013 167781 Lele56g0904 56 7692298 7720369 CCT
Lele49g0018 49 116378 124511 Lele56g0904 56 7692298 7720369 CCT
Lele50g0021 50 167248 169542 Lele56g0904 56 7692298 7720369 CCT
Lele51g0020 51 124573 135510 Lele56g0904 56 7692298 7720369 CCT
Lele56g0904 56 7692298 7720369 Lele50g0015 50 135306 139132 CCT
Lele53g1234 53 21008539 21011223 Lele56g0904 56 7692298 7720369 hybridization
Lele54g1206 54 17638956 17641320 Lele56g0904 56 7692298 7720369 hybridization