Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0888 ATGACACAAACGACAGCTCTTGGGCATCTACGTCTTGCCGTTTCGTTTCGCCTTGTATTCCAGATTCCCAAGTTTACTCCCCTCCGCCGCTCTGAGATCCTCGACGCATTCCTAACCGTCGCTTCGAGATCGGCCAACCAAAATCGAAGTCCCCAACTTAGATGTTGTTTGATGGAACAACTCCCATTACCAGATGCTTTTCTTGCGTTTCTGGAGGCGAATGGGCTTGACCCTTCAATTTATACCTCTCTTGATTCTACTCCGCGATACATTCGTTTGAAACCTAATTGTGAAGCATATCTTGAAGAGTTTGAAGCAAAGATGAATTGTAAGCTCCAGAGAGTAGACTGGTTGCCCGGGTTTTATTCTCTTCATTCCAATATACAGATTGCTAACTCAAAGGCATACCAAGAAGGCAAGATATATGGAATCGATGCATCTTCTGGTGCTGCTGTTATGGCTTTGAATGTATCAGCGGGAGACCACGTTCTTGATCTCTGTGCCGCTCCTGGTGCTAAACTTTGTATGATAGTGGACCTTCTTGGTGATTCAGGATCTGTTACTGGTGTAGATGCTGCAAGACATCGTTTAGCAGCATGTAGAACAATGCTTCAGAAGTATAATCTGGGCAATCGATGCCGACTTTTTGTTGCTGATGGAACAACATTTTCACTTATTCCTGCAGGATTCTGTTCAGATAATACATCATGTGAATCTGTATTGGCAGAAAAAGCTGATGTATTCAAGGAGTGGACATCTAAAAGAACATGGAAAGAGAGGAAAAGGGCAAGAAAAAGTGGAAATGTACAACTGGTCTCTGGGTCTCAACCTCCTGACCTCATTTATTATGGGCAGCATTCTGGAGTTGTTGGACTTACAAAAAAAGATCTATGTAAGGATGTATCTGACAGAAAGATTATGAGCCATGGCTATGACAAGGTCCTTGTGGATGCAGAGTGCACCCATGATGGTTCAGTCAAACATATCCAGAAGTTTGAACATTGGGGCTGGAAAACTCTTGAACACCGTGTGCTAGATGCAGATAGGACTGATAACTTGTTTGCTCTTCAGTTGAGTCTTCTAACCAATGGTTTCAGACTTTTAAAAGTTGGAGGATCTCTTGTCTACAGCACTTGCAGCTTAACTATTGCTCAGAATGAAGATGTGGTAGAGCAATTTCTGAAGGAAAATGTATCTGCTGAATTGCAGGAGATAGAAGCTGCCAGAAGTTGGCCTTGTAAGGGTGGTCGGATACAAAAAACATACCGTTTTGATCCATTAACATCTCAGACTAGTGGACTCTTTGTGGCAAAATTCACAAAATTGGCCCTTTAA 1335 0.427 MTQTTALGHLRLAVSFRLVFQIPKFTPLRRSEILDAFLTVASRSANQNRSPQLRCCLMEQLPLPDAFLAFLEANGLDPSIYTSLDSTPRYIRLKPNCEAYLEEFEAKMNCKLQRVDWLPGFYSLHSNIQIANSKAYQEGKIYGIDASSGAAVMALNVSAGDHVLDLCAAPGAKLCMIVDLLGDSGSVTGVDAARHRLAACRTMLQKYNLGNRCRLFVADGTTFSLIPAGFCSDNTSCESVLAEKADVFKEWTSKRTWKERKRARKSGNVQLVSGSQPPDLIYYGQHSGVVGLTKKDLCKDVSDRKIMSHGYDKVLVDAECTHDGSVKHIQKFEHWGWKTLEHRVLDADRTDNLFALQLSLLTNGFRLLKVGGSLVYSTCSLTIAQNEDVVEQFLKENVSAELQEIEAARSWPCKGGRIQKTYRFDPLTSQTSGLFVAKFTKLAL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0888 444 Pfam 16S rRNA methyltransferase RsmB/F 152 229 IPR001678 GO:0008168
Lele56g0888 444 Pfam 16S rRNA methyltransferase RsmB/F 298 439 IPR001678 GO:0008168
Lele56g0888 444 Gene3D Vaccinia Virus protein VP39 63 441 IPR029063 -
Lele56g0888 444 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 54 442 IPR023267 GO:0001510
Lele56g0888 444 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 441 IPR029063 -
Lele56g0888 444 CDD AdoMet_MTases 163 251 - -
Lele56g0888 444 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 76 442 IPR001678 GO:0008168
Lele56g0888 444 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 189 206 IPR023269 -
Lele56g0888 444 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 63 81 IPR023269 -
Lele56g0888 444 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 332 351 IPR023269 -
Lele56g0888 444 PRINTS RNA (C5-cytosine) methyltransferase signature 371 387 IPR023267 GO:0001510
Lele56g0888 444 PRINTS RNA (C5-cytosine) methyltransferase signature 424 441 IPR023267 GO:0001510
Lele56g0888 444 PRINTS RNA (C5-cytosine) methyltransferase signature 135 149 IPR023267 GO:0001510
Lele56g0888 444 PRINTS RNA (C5-cytosine) methyltransferase signature 164 174 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0888 Lele-ChrLele56 7465705 7478449 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g0888 56 7465705 7478449 Lele49g0071 49 428648 434652 CCT
Lele56g0888 56 7465705 7478449 Lele50g0082 50 514715 527701 CCT
Lele56g0888 56 7465705 7478449 Lele51g0079 51 459987 465975 CCT
Lele56g0888 56 7465705 7478449 Lele52g0080 52 493518 500194 CCT
Lele54g0546 54 11916723 11920617 Lele56g0888 56 7465705 7478449 hybridization