Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0874 ATGACCGGCGGAGCTGCCAGAGCCGTTGCCGGAGATCGTATTCCGGAACTTATTGGTCTAGTTCATGACATTGTTGGAATGTGCGGTGGAGTTGGTGGATACTCTTCCGCTACTGCCATTGACGCTGATGCTATGTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCTTTACTTACGTATTTGTTCGAGGAGATTAGGGACTCGAAGAAGGCCGTCATTGATTCTGGAAACTCGGATGCTTCTACTTCGTCCAACGGCTCTGAATCTTCCTGGGCCTCTGATCTGGTGCTCGCTCTCCACTCTGCTAAGCGCCTTATTTCAGTCGCTAGGAACTTTCGTTCTAATTCATCTTCTGGTGGAGCTGCCAAGAAAATAGTATTCCAATTTCAGTGTGTGACATGGAAATTGGAAAACCTATTAAGCGTCTTACCCTATGATGATCTAGACATATCAGAGGAAGTCAAGGAACAGGTGGAGTTGGTCAGAACACAATTGAGACGAGCCACTGAAAAATATGAATATATGATTTCAACGCTGTCATCTTATGACTTATCTCAGCCAATGATGGCTCAAGAAATTAGTCAAAATCTTGGTAGATCTTTGAGTGGATTGCATAAACAACATAGCTGTCCTGATCATTTATCAGATCTAGAAAGCATTACTAGAAACAATGGATGGAAAAGTTGCAGCTCAAATCAGACAAGCCCTCGCTTGGAAAGGTCACAGAGCATTCCTACATCATCTGAGGTTTCATTATCAAATCTTGTTGATCCTGAAGGTCAAGAAAATTATGTGAAAAAGAGTCTATCTGAAGTGAAAAAGCCTGAGGCAATTCGTATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACAGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATGGGGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACACTTACACCAAACTATGTGTTAAGGAGCCTTATAACTCAGTGGTGTATGGAGCATAATATTGAGCACCCAACAGGACTTACAAATGGCAAGATAAAAAAGAGTGATGGATCATTCAAAGATGTTACGGGAGACATGGCTGCCATTGGAGCTCTTGTCCAGAAGCTCTCTAGCCACAACGTCGAGGAACGTAGAGCTGCTGTTGCTGAAATTCGATCACTTTCCAAAAGAAGTACAGATAACAGAATACTAATTGCTGAAGCAGGAGCAATCCCAATTCTTGTTAACCTTTTAACATCAGAAGATGTCAAATCAATGGTCGACGAAGCCTTGACAATAATGTCTGTTCTCGCCAGCCACCAAGAAGCAAAGATTGCTATTGTAAAGGCCGGCACTATACCTGTTCTTATCGACCTATTGAGGACCGGATTGCCGCGAAACAAAGAAAATGCTGCAGCCATTTTACTGGCCTTGTGTAAGAGGGATCCCAAAAATCTGGCGTGTATAAGCAGACTGGGTGCTATCATACCTTTGACAGAACTTGCTCGGAGTGGCACAGAAAGGGCTAAAAGGAAGGCTACTTCACTATTAGAGCATCTTTGA 1602 0.4313 MTGGAARAVAGDRIPELIGLVHDIVGMCGGVGGYSSATAIDADAMFKKDCTDLVRRISLLTYLFEEIRDSKKAVIDSGNSDASTSSNGSESSWASDLVLALHSAKRLISVARNFRSNSSSGGAAKKIVFQFQCVTWKLENLLSVLPYDDLDISEEVKEQVELVRTQLRRATEKYEYMISTLSSYDLSQPMMAQEISQNLGRSLSGLHKQHSCPDHLSDLESITRNNGWKSCSSNQTSPRLERSQSIPTSSEVSLSNLVDPEGQENYVKKSLSEVKKPEAIRIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCMEHNIEHPTGLTNGKIKKSDGSFKDVTGDMAAIGALVQKLSSHNVEERRAAVAEIRSLSKRSTDNRILIAEAGAIPILVNLLTSEDVKSMVDEALTIMSVLASHQEAKIAIVKAGTIPVLIDLLRTGLPRNKENAAAILLALCKRDPKNLACISRLGAIIPLTELARSGTERAKRKATSLLEHL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0874 533 SMART arm_5 453 493 IPR000225 GO:0005515
Lele56g0874 533 SMART arm_5 411 449 IPR000225 GO:0005515
Lele56g0874 533 Pfam Armadillo/beta-catenin-like repeat 412 443 IPR000225 GO:0005515
Lele56g0874 533 CDD RING-Ubox_PUB 286 328 IPR045210 -
Lele56g0874 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 465 IPR000225 GO:0005515
Lele56g0874 533 MobiDBLite consensus disorder prediction 229 258 - -
Lele56g0874 533 Pfam U-box domain 282 353 IPR003613 GO:0004842|GO:0016567
Lele56g0874 533 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Lele56g0874 533 FunFam RING-type E3 ubiquitin transferase 439 533 - -
Lele56g0874 533 Gene3D - 362 533 IPR011989 -
Lele56g0874 533 Coils Coil 153 173 - -
Lele56g0874 533 FunFam RING-type E3 ubiquitin transferase 281 356 - -
Lele56g0874 533 SUPERFAMILY ARM repeat 377 533 IPR016024 -
Lele56g0874 533 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Lele56g0874 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 359 IPR013083 -
Lele56g0874 533 PANTHER U BOX DOMAIN-CONTAINING 421 532 - -
Lele56g0874 533 SUPERFAMILY RING/U-box 279 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0874 Lele-ChrLele56 7172724 7175647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0874 27 533 U-box Gene Family AT1G23030 51.262 4.31e-148 436