Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0859 ATGGGGGATCACTTTGTATTGCTGGTTGATCGTTTGCTCACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGAAATCGTGCAATGCAGGAGGCAGCATCCTCAGCTTTGAATGAAGCAGCACAAGTTGATGTCTCTTTGATAAAGATGGGGATGGAAGATTTGAAATCTCCGAGGAAAATTGTTGAATGTCGGATATGTCATGATGAGGATGAAAATTCCAATATGGAGACACCGTGCTCCTGTTGTGGTAGTTTGAAGTACGCTCACCGCAGATGCATACAAAGGTGGTGTAATGAGAAGGGTGACACCATCTGTGAGATATGCCACCAGCAATATAAACCTGGTTATACCGCTCCACCTCCATTATTTCAATTTGGACGAATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCTAGAAGAGATTTGAACAATGGTCATTTGGTTCGCATGGTTTCCCCTAACCAGAATCTCAACAATTCTAACTACTATCAGCATTCAGCTTCTACTGCAGGAATATGCTGCCGTTCAGTCGCTCTCATTTTCATGGTTTTACTTATTTTGAGACATTCTCTTCCTCTCATTATCAGTGGAAACAAGGACTATTCCTTTTCTCTGTTTTTGTTGTTACTAATTCGAACCGCGGGAATTGTTATTCCTATATATTTCATGGTGAAAGCATTGACATGTATACAACGCCATCGGCGACAACAACGGAATCCTTCTAATGCCATGGTCAACCTATCGGATGGTGAAACCGAGCAAGTAGTGTTGCCATCTCAGCTTCACGTTATTCGTGTTCAGTGA 810 0.421 MGDHFVLLVDRLLTESTLEAALESRNRAMQEAASSALNEAAQVDVSLIKMGMEDLKSPRKIVECRICHDEDENSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTICEICHQQYKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNNGHLVRMVSPNQNLNNSNYYQHSASTAGICCRSVALIFMVLLILRHSLPLIISGNKDYSFSLFLLLLIRTAGIVIPIYFMVKALTCIQRHRRQQRNPSNAMVNLSDGETEQVVLPSQLHVIRVQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0859 269 FunFam Zinc finger family protein 52 119 - -
Lele56g0859 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Lele56g0859 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 119 IPR013083 -
Lele56g0859 269 CDD RING_CH-C4HC3_MARCH 64 110 - -
Lele56g0859 269 SUPERFAMILY RING/U-box 62 114 - -
Lele56g0859 269 Pfam RING-variant domain 64 109 IPR011016 GO:0008270
Lele56g0859 269 Pfam Protein of unknown function (DUF3675) 115 228 IPR022143 -
Lele56g0859 269 ProSiteProfiles Zinc finger RING-CH-type profile. 56 116 IPR011016 GO:0008270
Lele56g0859 269 SMART ringv_2 63 110 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0859 Lele-ChrLele56 6872584 6874967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0859 58 110 C3H Transcription Factor Family AT2G37950 46.429 2.51e-07 48.5