Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0845 ATGGGGCGAGAAAGTCACAAAATGAATGCTTTAAGCTTGCTGAGAAGTAGAATCTGTGACCCCAAATTTATATACAAGCCTCTCCACGATTCTGCAGACAGCAACTACAGTAAACTGAAATTCATGATATCAAGTTCAATTACTGAGGCATGCAATAATTCTATTCTGCTTCTTGGTCCCCGTGGTTCTGGGAAATCTGCGGTTCTGGAGCTTGTTGTTGGAGATTTATTGGCGGAGTATCCGGACATGATTTCAGTGATCAAGTTGAGTGGGCTTTTACACCGCGATGACAACTGTGCATTGAAGGAAGTAGCTAGGCAGTTATGCATGGAGCATCAATTGCAATTCTCAAAAGCGGCATCATTTGATGACAACTCTCAATTCATGGTAGCCATGCTAAAGGAGTGTGGATTAGCTCATAAAACAATTGTATTTATTCTGGATGAGTTTGACCTGTTTGCCCAGGGTAAGCAGAGGTTGCTTTATAGCTTGCTAGATGCTATGCAATCAATAACATCACAGGCTGTTGTCATTGGCATTAGTTGTCGGCTGGATGCGGATCAGCTATTAGAGAAAAGAGTACGATCTCGTTTTTCACATAGAAAGTTATTGTTCCTTCCACCTTCTATGGAAGACTCAAAGAGAATTTTGGAGCAAGTACTGTCTTTACCGGTGGATTCAAGTCTTCCACATGATTATGCTGTTGAATTTAATAGAAAAGTTCAAACGCTAGTTGTTGATTGGGATAAGCTTCTTGTTGCTGCTGCTGCTGCTGCTTATAGATTTTGTGCTGTTTCTTGTATGGATTTGCATAGTGGCCTTTTGATATACGAGAACTTTGAAACTGCATTCTCAAGTATTCTCAGGCAACCCAAACTGGAATGTTTAAAAAATTGCTCCATATTAGAACTTTACATCCTGGTTTGCATGAAGAGGTTGGAAGTTAAAGAACAGACCTTATGCAACTTCAATTCTGTGATGAAAGGCATTTCATCTGTCGAATTCCGCCCTGTTAAGCTTTTGATCTCTTCTGCTGAGCTACACCAAGGACTAAGAGCATATCATTCATGCCCTGTAACCACCAGTAGTCCAATCCAAAAGTCCGAATGCGTGGTTTACTCAATGACCCTCTGTTTCAGAGCTTCAAAAGCTTTTGCTGCAACTGCTACACCCATCACAGCTCTTAAAGTACGTCTTCTTTTTCCTTTCTGCTCCACTTTCTATTGCTGCATCTCTAGCTCCTCCACATTAGTTTCGGCTTCTGAGGTCCATTACAGAGAACTTATCTTCGACACCATTGAAGAAAGGCCTGGAGCTTTTTGTAATTGTAATTGGGCATCTGATCAGTTTCGAGCTGTGGTGGCTGAACCCGAGTTGTTTGTTCGGGTCCTCAACTCTATTCGAGACAGACCGAAAATCGCTTTGCGCTTCTTTAGATGGGTGGAGTGCCAACGTGAATATAAGGGATCTGTATTCGCACTTGTCGTTATTCTTGACATTCTTGCGCAGAATAATCAGATGCGATCGGCGTATCGGGTTATGGAGGGGGTGATTAGCGGGAATATGGGCGGAATTGTGGATGTTTTGATTAACGGGTATGTGGCTTCGGATGTATCTGTTAAACTTCTCGATCTGTTGCTGTGGATATATACAAAAAAGTCAATGTTAGAGAAGTGCCTATGCGTGTTTCATAAAATGGTTCATAATAAGCTGTTGCCAGATGTGAAGAACTGTAATAGGATTCTTAGGACACTTAGGAATAAAAGACTGGTCAATAAAGCAAGAGAAGTTTATAATTTAATGACTGAATTTGGCATTAAGCCTACAACGGTCACGTATAATACCATGCTGAGTTCACTTTGCAAGGAAGGGGAAGTCCATCAAGCTTTGGACCTTTTATCGGAGATGCAAGAAAGAGGGTGCCTTCCCAATGATGTCACTTACAATATTTTGATAAATAGTTTGTCTAACGAAGGGGAACTAGAGCAAGCCAAGGAATTGATTGGGGAGATGCTGAAATCTGGACTGGAAGTTTCAACTTATACATATAACCCTTTGATTGGTGGGTACTGCAAGAAGGGACTGCTTAAAGAAGCATCTATTGTTGGAGAGGAGATGTTGAGGAGAGGAGTTTCACCTACTGTAGTGACCTACAATACGTTCATGCATGGTTTTTGCAAGTTGGGAAGAATGATTGAGGCAAGACAGTATTTGTCTGTTATGCTAAATAAGAATCTGCTGCCGGACATAGTTTCATACAATATTCTAATTTATGGTTACTGTAGGTTGGGGAACATAGAAGAAGCTTTTGTCTTATTTGATGAGCTACGATGTAAGAATTTTGTACCCACTGCTGTGACTTATAATACATTGATAGATGGTCTTTGCAGATTAGGGAATTTGGAGGTGGCCCAGAAGCTCAAAGAAGAAATGATCATTCAGGGGCGAAGTCCTGATGTTTATACTTTCACAATTCTTGTAAGAGGGTCATGCATGATAGGTAACTTGGAAATGGCTAAGGAACTGTTTGATGAGATGCTTCATAGAGGATTGCTGCCAGATCGCTTTGCATACATTACTCGTATAGTAGGTGAACTGAAACTTGGTGACTTCTACAAGGCCTTTGGTATGCAAGAAGAAATGCTAGCTAAAGTGAGAAGGATGGATCAAGCTTATAAGTTTTTCATGGAGATGCAAGCATATGGTCTTTCTGCAAATAAGTATACCTACACTATTTTAATCAATGAGAACTGCAACATGGGTTATTGGAAGGAGGCCTTAATATTGTATAAGGAAATGCTAGATAAGGAAATAGAGCCTGATTCTTGTACTCACAGTTCGCTTTTGAAACATCTAAACAAAGACTATAAATTTTATGCAATTCAACTTCTTGAGAATTTGATTGGAGGTGGCAAATAA 2919 0.4036 MGRESHKMNALSLLRSRICDPKFIYKPLHDSADSNYSKLKFMISSSITEACNNSILLLGPRGSGKSAVLELVVGDLLAEYPDMISVIKLSGLLHRDDNCALKEVARQLCMEHQLQFSKAASFDDNSQFMVAMLKECGLAHKTIVFILDEFDLFAQGKQRLLYSLLDAMQSITSQAVVIGISCRLDADQLLEKRVRSRFSHRKLLFLPPSMEDSKRILEQVLSLPVDSSLPHDYAVEFNRKVQTLVVDWDKLLVAAAAAAYRFCAVSCMDLHSGLLIYENFETAFSSILRQPKLECLKNCSILELYILVCMKRLEVKEQTLCNFNSVMKGISSVEFRPVKLLISSAELHQGLRAYHSCPVTTSSPIQKSECVVYSMTLCFRASKAFAATATPITALKVRLLFPFCSTFYCCISSSSTLVSASEVHYRELIFDTIEERPGAFCNCNWASDQFRAVVAEPELFVRVLNSIRDRPKIALRFFRWVECQREYKGSVFALVVILDILAQNNQMRSAYRVMEGVISGNMGGIVDVLINGYVASDVSVKLLDLLLWIYTKKSMLEKCLCVFHKMVHNKLLPDVKNCNRILRTLRNKRLVNKAREVYNLMTEFGIKPTTVTYNTMLSSLCKEGEVHQALDLLSEMQERGCLPNDVTYNILINSLSNEGELEQAKELIGEMLKSGLEVSTYTYNPLIGGYCKKGLLKEASIVGEEMLRRGVSPTVVTYNTFMHGFCKLGRMIEARQYLSVMLNKNLLPDIVSYNILIYGYCRLGNIEEAFVLFDELRCKNFVPTAVTYNTLIDGLCRLGNLEVAQKLKEEMIIQGRSPDVYTFTILVRGSCMIGNLEMAKELFDEMLHRGLLPDRFAYITRIVGELKLGDFYKAFGMQEEMLAKVRRMDQAYKFFMEMQAYGLSANKYTYTILINENCNMGYWKEALILYKEMLDKEIEPDSCTHSSLLKHLNKDYKFYAIQLLENLIGGGK 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 643 IPR002885 -
Lele56g0845 972 FunFam Origin of replication complex subunit 4 33 207 - -
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 644 678 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 786 820 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 821 854 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 681 715 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 646 679 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 578 609 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 751 784 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 611 644 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 716 750 IPR002885 -
Lele56g0845 972 TIGRFAM PPR: pentatricopeptide repeat domain 908 942 IPR002885 -
Lele56g0845 972 CDD AAA 53 201 - -
Lele56g0845 972 Pfam PPR repeat 815 846 IPR002885 -
Lele56g0845 972 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 444 744 - -
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 783 IPR002885 -
Lele56g0845 972 SUPERFAMILY HCP-like 591 774 - -
Lele56g0845 972 Gene3D - 32 207 IPR027417 -
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 906 940 IPR002885 -
Lele56g0845 972 Pfam AAA ATPase domain 37 173 IPR041664 -
Lele56g0845 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 223 IPR027417 -
Lele56g0845 972 Gene3D Tetratricopeptide repeat domain 673 743 IPR011990 GO:0005515
Lele56g0845 972 Gene3D Tetratricopeptide repeat domain 603 672 IPR011990 GO:0005515
Lele56g0845 972 Gene3D Tetratricopeptide repeat domain 455 602 IPR011990 GO:0005515
Lele56g0845 972 Gene3D Tetratricopeptide repeat domain 814 880 IPR011990 GO:0005515
Lele56g0845 972 Gene3D Tetratricopeptide repeat domain 744 813 IPR011990 GO:0005515
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 784 818 IPR002885 -
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 713 IPR002885 -
Lele56g0845 972 Gene3D Tetratricopeptide repeat domain 881 961 IPR011990 GO:0005515
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
Lele56g0845 972 SUPERFAMILY HCP-like 731 931 - -
Lele56g0845 972 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 262 328 IPR032705 -
Lele56g0845 972 Pfam PPR repeat family 748 797 IPR002885 -
Lele56g0845 972 Pfam PPR repeat family 679 727 IPR002885 -
Lele56g0845 972 Pfam PPR repeat family 608 656 IPR002885 -
Lele56g0845 972 Pfam PPR repeat family 882 919 IPR002885 -
Lele56g0845 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 819 853 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0845 Lele-ChrLele56 6694155 6703536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0845 1 359 Core DNA Replication Machinery Family AT2G01120 56.010 4.25e-152 454