Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0840 ATGGGATTACAGAATAATCTCCACGACGTCTCTTCCGATTCCATTCCCCTCCTGCTCCTCCTTCACATCGCCGCCGGCCTCAATTACCTCCGCTCCTTCCTCTTCGCTTTCCTCCACTCCCTCGGCCTCTCCAGATTCCACTCCCACACGCCTGCTATCGTTGACGATGCCCTCCTCGCCGCCGTCGGATCCGGCCTCGCCCGCCTTGTGATTCTTTCCGACCAACTCCACGCCACCAACCGTGATCTTACTGACGACGACGATGACGAAGACGATGACCGCGCGATTGCCGCCTCCTCCTCCTCCATGTGTGTGGTGTGCCGGAGCTACTATAGGGAAGGCGACCAGGTAAGGAGGCTTCCCTGCCGCCACGTCTTCCATAAACGCTGCTTTGATGCTTGGCTTCACCAGCTCAAGTTTAATTGTCCTCTCTGTCGATCGGCTCTCGTTTCCGACGAACGCGTGGCCCTTGCAGAGCGGCTCGTTGGTACCGAAGTCTTATCCTGGTTCTCTGTTCGGTGA 522 0.5785 MGLQNNLHDVSSDSIPLLLLLHIAAGLNYLRSFLFAFLHSLGLSRFHSHTPAIVDDALLAAVGSGLARLVILSDQLHATNRDLTDDDDDEDDDRAIAASSSSMCVVCRSYYREGDQVRRLPCRHVFHKRCFDAWLHQLKFNCPLCRSALVSDERVALAERLVGTEVLSWFSVR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0840 173 SUPERFAMILY RING/U-box 103 151 - -
Lele56g0840 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 161 IPR013083 -
Lele56g0840 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 39 156 - -
Lele56g0840 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lele56g0840 173 SMART ring_2 104 145 IPR001841 -
Lele56g0840 173 Pfam Ring finger domain 103 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0840 Lele-ChrLele56 6619074 6619595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0840 1 172 C3H Transcription Factor Family AT1G15100 46.512 1.88e-42 137