Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0830 ATGGATTCAAACACTTCAAGCTTTCTTCTGAATTCTTCAACTATTCACCCAGATTTCTACCAAGGAAAAGAAGATGATGATGATGGCATGATTGATTTGGGACTTAGCCTCAGAACTGTTCAACCTGAAGCTTATCATTCATCTAGCAACTTTTTGAGTTTGTGGAGATATGATGATGACCTTATGGATTGGCCACAGTCTAATAATAATCTCAAAAACTTGAGCACAATGCAATCTAAATCTGTTCCAGGAAACTTTGATGAAGAAATTGAAGGTGTTCAGAGGAATGATAGGTGGGCTTATGTGAAGGTGAACATGGATGGTGTTACAGTTGGAAGAAAAATCTGTGTCCTTGATCATGAAGGCTACTCAAGTCTTGCAAATCAGTTAGAGAACATGTTTGGAAGCAAATCTGTTTCTGGTTTGAAACTGTTTCAATCTGAGTCAGAGTATTTACTGTTCGACAAAGACAAAGAAGATCATTGGAGAAATGTAGAGGATGTCCCATGGAAAGAATTTGTAGGAACTGTGAAGAGGTTGAGGATTGCAAGAAAGAATGCAGACTAA 567 0.3774 MDSNTSSFLLNSSTIHPDFYQGKEDDDDGMIDLGLSLRTVQPEAYHSSSNFLSLWRYDDDLMDWPQSNNNLKNLSTMQSKSVPGNFDEEIEGVQRNDRWAYVKVNMDGVTVGRKICVLDHEGYSSLANQLENMFGSKSVSGLKLFQSESEYLLFDKDKEDHWRNVEDVPWKEFVGTVKRLRIARKNAD 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0830 188 SUPERFAMILY CAD & PB1 domains 98 182 - -
Lele56g0830 188 Gene3D - 94 188 - -
Lele56g0830 188 Pfam AUX/IAA family 64 184 IPR033389 -
Lele56g0830 188 ProSiteProfiles PB1 domain profile. 99 187 IPR000270 GO:0005515
Lele56g0830 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 54 186 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0830 Lele-ChrLele56 6481621 6482805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0830 100 182 B3 DNA Binding Superfamily AT1G59750 36.145 1.58e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele56g0830 AUX_IAA 6e-20 CL0072