LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g0823	ATGAGTAGCAATGGCCAATCTTCCGGTAACAGTCATAACATCAGAGACTTAATCTGCAACGCCGGCGCTGGTGCCTCGGCTGGGGCTATAGCGGCCACATTTGTGTGCCCATTGGATGTCATCAAGACTAGACTACAAGTTCACGGTCTTCCCCCTGGGCAGACGGGTAGCATTATCATCTCCAGTTTGCAGAATGTAGCAAGGACTGAAGGTTTCAGGGGACTGTATCGTGGACTTTCACCAACAATACTAGCATTACTTCCAAACTGGGCGGTTTACTTCACTGTTTATGAGCAACTAAAAGGCCTGCTCCGTTCACGTGATGGTTTCCACCAGCTCACAACTAGTGAAAATATGATCGCTGCTGCTGGTGCTGGAGCAGCCACAGCAATTTCAACAAACCCATTGTGGGTTGTTAAGACCAGACTACAAACACAGGGAATGAGGTCAGATGTTGTTCCTTACAAAAGTGTTATTTCTGCTCTGACAAGGATTACCGGTGAGGAAGGCATGCGAGGACTGTACAGTGGCATCTTGCCTTCATTGGCCGGCATAAGTCATGTTGCAATACAATTCCCATCGTATGAAAAGATTAAGTCATACATGGCAAAAAAGGAAAACACTACAGTTGACAAGCTAAGCCCCGGAAATGTTGCCATTGCATCTTCAATTTCCAAAGTAACTGCCTCTGTAATGACTTATCCTCATGAGGTGATACGATCCAGGTTACAGGAGCAAGGACAGGCCAAAAATATGAAGGTCCGGTATGCAGGGGTTGTTGATTGTACTAAGAAGGTGTTCCAGAAGGAAGGCTTTCCGGGCTTTTATCGCGGTTGTGCTACCAATCTATTAAGAACAACTCCATCGGCTGTCATCACATTCACTAGTTACGAGATGATATACCGGTTCTTCCATCGTTTTGTACCTCAGGACAACGTATATCCACAAGGCTGTGCTAAATCTAATGATCTTAACAAGCCTAAGCCAGAAGACAGTGATGACATTAAGTTTGAAAAGGGCCCTATGGAGAGTCATTGTTCAAAAGCCACGTCAAAGTCGTGTACCTTCAATGGGAGACGCAAGTTTCATAGCTACAATAAGACCCAGAATGGCGGTAATCACCATCTCAATCTGATGGATGAGAAAGCTTGA	1152	0.454	MSSNGQSSGNSHNIRDLICNAGAGASAGAIAATFVCPLDVIKTRLQVHGLPPGQTGSIIISSLQNVARTEGFRGLYRGLSPTILALLPNWAVYFTVYEQLKGLLRSRDGFHQLTTSENMIAAAGAGAATAISTNPLWVVKTRLQTQGMRSDVVPYKSVISALTRITGEEGMRGLYSGILPSLAGISHVAIQFPSYEKIKSYMAKKENTTVDKLSPGNVAIASSISKVTASVMTYPHEVIRSRLQEQGQAKNMKVRYAGVVDCTKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEMIYRFFHRFVPQDNVYPQGCAKSNDLNKPKPEDSDDIKFEKGPMESHCSKATSKSCTFNGRRKFHSYNKTQNGGNHHLNLMDEKA	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g0823	383	Gene3D	Mitochondrial carrier domain	3	108	IPR023395	-
	Lele56g0823	383	Gene3D	Mitochondrial carrier domain	109	307	IPR023395	-
	Lele56g0823	383	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Lele56g0823	383	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Lele56g0823	383	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Lele56g0823	383	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Lele56g0823	383	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Lele56g0823	383	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Lele56g0823	383	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Lele56g0823	383	MobiDBLite	consensus disorder prediction	324	345	-	-
	Lele56g0823	383	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	16	309	IPR044712	GO:0006862\|GO:0055085
	Lele56g0823	383	MobiDBLite	consensus disorder prediction	318	350	-	-
	Lele56g0823	383	SUPERFAMILY	Mitochondrial carrier	15	299	IPR023395	-
	Lele56g0823	383	Pfam	Mitochondrial carrier protein	20	105	IPR018108	-
	Lele56g0823	383	Pfam	Mitochondrial carrier protein	213	305	IPR018108	-
	Lele56g0823	383	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Lele56g0823	383	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Lele56g0823	383	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g0823	Lele-ChrLele56	6391157	6396299	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g0823	1	311	Chloroplast and Mitochondria Gene Families	AT1G25380	69.841	1.05e-146	418

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele53g0606	53	16198394	16202948	Lele56g0823	56	6391157	6396299	hybridization
	Lele54g0615	54	13039210	13044347	Lele56g0823	56	6391157	6396299	hybridization