Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0810 ATGGTTAATGGACCCTCCACATTAGAAGGACTTGGAATGAGTACAATGCATCTTGGCCAATCATACAAGTCTCCCATTAACTCATGCTTCAGGCATAAAGCAGTTGGATTCAAAAGGAAGAGAAACAACAAGAGGATTGAAGAGAAACGGAATGAAGTAATCCATGTAAGAGCAAAAAGAGGTCAAGCTACTGATAGCCACAGTTTAGCAGAACGGGTGAGAAGAGAGAGAATCAACGAGAAGATGAGATGTTTGCAGGATCTGGTTCCAGGCTGCTACAAGGCAATGGGAATGGCAGTTATGTTAGATGTGATCATAAACTATGTTCTATCACTACAGCAACAGATTGAGAGAAGTACTAGCACAGATGGAATCCAAGGGATGGAAGGAGAAGGTTCTGGAGGCTTTGCTTATTGGAATCCTACATGGCCTCTTCAATAA 441 0.4218 MVNGPSTLEGLGMSTMHLGQSYKSPINSCFRHKAVGFKRKRNNKRIEEKRNEVIHVRAKRGQATDSHSLAERVRRERINEKMRCLQDLVPGCYKAMGMAVMLDVIINYVLSLQQQIERSTSTDGIQGMEGEGSGGFAYWNPTWPLQ 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0810 146 Pfam Helix-loop-helix DNA-binding domain 66 90 IPR011598 GO:0046983
Lele56g0810 146 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 112 IPR011598 GO:0046983
Lele56g0810 146 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 117 IPR024097 GO:0006355
Lele56g0810 146 Gene3D - 62 123 IPR036638 GO:0046983
Lele56g0810 146 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 121 IPR036638 GO:0046983
Lele56g0810 146 SMART finulus 68 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0810 Lele-ChrLele56 6234500 6236182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0810 48 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 82.857 1.89e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g0810 HLH 7e-05 No_clan