Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0798 ATGACTTCTGCTAAGAACGCCGCCAGCGCCGTCGGCGGCAAGATCGTCAGAGCCTGTGACAGCTGCATAAGGAAGCGTGCTCGCTGGTACTGTGCCGCCGATGATGCTTTCCTCTGCCAATCTTGTGACTCTCTGGTTCACTCCGCCAACCCATTGGCTCGCAGGCATGGAAGGCTCCGATTGAAAACTGCGTCGTTTAAATCCTCACCCGTTTCCTCCGATGCGCTCGTTCTAGCAGCCGTCGATCTCACTCTGGCTCCCTCGTGGCACCAAGGTATCACCAAGAAGCCTCGCACTCCTCGACATGGCAAGAACCAGTCTTTATCGTCTGCCAATCAAACGCCTAGAGGACGATACGAACCCACCAGAAACCCGTTCCATCTTGTGCCGGAAGTGGGTTCCGATGAATATTCCAATTGTCACGACGAAAACGAAGAGCAGCTCCTTTATCAGGTACCCATATTCGACCCGTTGGTCACAGAGCTATGTACTCCTCCGTCGTCTGCAACTTCAGCCGAAGGAGCAACAGAAGCTACGCCCGCCGCCCCAAACCAGATGGACGACAATAAAACCTCATCGGGAAACAAAAGCAATCGTAATAACGGAGGGGACAATTTACACGGGTTTCTTCCATCTGAAATGGAACTTGCTCAGTTCGCGGCTGATGTAGAGAGTTTACTGGGCAGAGGATTAGAGAATGAGTGCATACGCATGGAGGATTTAGGGCTTACTGACAGTAAAGAGAAGGAGGAATCGAAGGAGCGTTGTGAGATGGGTAGTGAAAAAGTGAAGGTGGAGGAAGATGAAGAGAGCCCATGTAAGATTGAAACTGCGGATGAGATTGATATGGAGATTGGAATCAGAGAACCATTTGAATTGAACTTCGATTATGATGACTCTCCGGCGACACGCGAACAACCGGACGACGACGACGACAAGAAGGTCGAGATGAGGAATAACGAAGGAGAACTCAAAGCAAATAGTAATGAGAGAAAGAGGAAGATACTGTTGCAGTTAGACTACGAAGCAGTCATTTCAGCTTGGAAATCTCAGAAATCTCCATGGACAACCGGCGGCAAACCAGAGTTGGACGCCGACGAGTGTTGGCCGGAGTGCATGGGGACTTGTGGAACGGAGCTTCATCAACCCTACTATGGAGAAATGGGGACATACGGCGGGTGCCAAGCCGGAGGGATGGGAGACGGCGGGAGAGAAGCGAGAGTGTCGAGGTACAGAGAGAAGAGGAGGACGAGATTGTTCTCAAAGAAAATAAGGTACGAGGTTCGGAAATTGAATGCAGAGAAGAGACCTAGAATGAAAGGGAGGTTTGTGAAGAGGGCTTCTTTTGCAGTTGCAACGCAAAAACCCCCATCTTTATCTTCATGCCCTTTGCTCAGCAGATAA 1404 0.5043 MTSAKNAASAVGGKIVRACDSCIRKRARWYCAADDAFLCQSCDSLVHSANPLARRHGRLRLKTASFKSSPVSSDALVLAAVDLTLAPSWHQGITKKPRTPRHGKNQSLSSANQTPRGRYEPTRNPFHLVPEVGSDEYSNCHDENEEQLLYQVPIFDPLVTELCTPPSSATSAEGATEATPAAPNQMDDNKTSSGNKSNRNNGGDNLHGFLPSEMELAQFAADVESLLGRGLENECIRMEDLGLTDSKEKEESKERCEMGSEKVKVEEDEESPCKIETADEIDMEIGIREPFELNFDYDDSPATREQPDDDDDKKVEMRNNEGELKANSNERKRKILLQLDYEAVISAWKSQKSPWTTGGKPELDADECWPECMGTCGTELHQPYYGEMGTYGGCQAGGMGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVATQKPPSLSSCPLLSR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0798 467 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 448 - -
Lele56g0798 467 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lele56g0798 467 MobiDBLite consensus disorder prediction 292 329 - -
Lele56g0798 467 Pfam CCT motif 404 446 IPR010402 GO:0005515
Lele56g0798 467 ProSiteProfiles CCT domain profile. 404 446 IPR010402 GO:0005515
Lele56g0798 467 MobiDBLite consensus disorder prediction 103 119 - -
Lele56g0798 467 CDD Bbox1_BBX-like 18 61 - -
Lele56g0798 467 MobiDBLite consensus disorder prediction 165 209 - -
Lele56g0798 467 MobiDBLite consensus disorder prediction 165 205 - -
Lele56g0798 467 Pfam B-box zinc finger 17 57 IPR000315 GO:0008270
Lele56g0798 467 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lele56g0798 467 MobiDBLite consensus disorder prediction 245 273 - -
Lele56g0798 467 MobiDBLite consensus disorder prediction 91 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0798 Lele-ChrLele56 6104997 6106527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0798 5 446 C2C2-CO-like Transcription Factor Family AT1G25440 45.354 2.20e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele56g0798 CCT 1.6e-17 CL0281