Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0790 ATGAAGATATTCGTCAAGACTCTCAAGGGCACCAGCTTCGAAATCGAAGTGAAGCCTGAGGATACGGTTTCTGAAGTGAAGAAACATGTAGAAACTGTCCAGGGTGCAGCTGTCTATCCTGCTGCACAGCAAATGCTTATTTATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATCAAGTAGTTGAAAACAGTTTTATTGTAATCATGCTATCAAAGAGTAAGAGCTCATCAGGCGAGGGATCCACTACTGCTCCTTCAGTTAAGGCCCCTCAAACTAGTTCAGCTCCTACGCCAGCACCTGCATCAGCAGTACCTCAAGCTCCTGCTACAGCTGGGGCATCGCCTGTATCTGTTACTGCACCTGTGTCTGCATCTGCACCGGCACCTTCACTAGCTCCAGCTCCTGCCGTGTCAGGGTCTGATGTCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGTGGTAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACGGGTATCCCAGAGCAAGCTGAAGCTCCCCCTGTGGCTCGTGCGCCTGCAAGTGGTGCCCAAACTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTTCAAGTGGACCTAATGCTAATCCTCTAGATCTCTTTCCTCAGGGCCTCCCAAATGTTGGTGCTGGTGCAGCTGGTGCTGGCAATCTAGATTTTCTTCGCAACAGTCAACAGTTCCAAGCGTTGCGATCCATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAGGAGCTTGGGAAACAAAATCCTCATCTGATGAGATTGATTCAAGACCATCAAGCTGACTTCCTGCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATACATTGGGGCAGCTGGCTGATGCGATGCCACAAACAATAGCTGTCACACCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTCGATCGGGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAGAATGAAGAATTGGCTGCTAACTACCTCTTGGATCACATGCATGAGTTTGAGGAATGA 1179 0.4877 MKIFVKTLKGTSFEIEVKPEDTVSEVKKHVETVQGAAVYPAAQQMLIYQGKVLKDGTTLEENQVVENSFIVIMLSKSKSSSGEGSTTAPSVKAPQTSSAPTPAPASAVPQAPATAGASPVSVTAPVSASAPAPSLAPAPAVSGSDVYGQAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARAPASGAQTGNAPSAAPQAAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRSMVQANPQILQPMLQELGKQNPHLMRLIQDHQADFLRLINEPVEGGEGNTLGQLADAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0790 392 PRINTS DNA repair protein Rad23 signature 374 389 IPR004806 GO:0006289
Lele56g0790 392 PRINTS DNA repair protein Rad23 signature 359 373 IPR004806 GO:0006289
Lele56g0790 392 PRINTS DNA repair protein Rad23 signature 342 358 IPR004806 GO:0006289
Lele56g0790 392 PRINTS DNA repair protein Rad23 signature 293 315 IPR004806 GO:0006289
Lele56g0790 392 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 381 - -
Lele56g0790 392 Gene3D - 1 80 - -
Lele56g0790 392 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele56g0790 392 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele56g0790 392 MobiDBLite consensus disorder prediction 124 143 - -
Lele56g0790 392 MobiDBLite consensus disorder prediction 209 243 - -
Lele56g0790 392 FunFam UV excision repair protein RAD23 homolog 339 387 - -
Lele56g0790 392 Pfam XPC-binding domain 267 322 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele56g0790 392 Gene3D - 153 203 - -
Lele56g0790 392 FunFam UV excision repair protein RAD23 homolog 153 203 - -
Lele56g0790 392 TIGRFAM rad23: UV excision repair protein Rad23 1 391 IPR004806 GO:0006289
Lele56g0790 392 SMART uba_6 348 385 IPR015940 -
Lele56g0790 392 SMART uba_6 160 200 IPR015940 -
Lele56g0790 392 Gene3D - 258 323 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele56g0790 392 SUPERFAMILY UBA-like 157 212 IPR009060 GO:0005515
Lele56g0790 392 CDD Ubl_Rad23 1 74 - -
Lele56g0790 392 SUPERFAMILY XPC-binding domain 263 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele56g0790 392 CDD UBA1_Rad23_plant 154 203 - -
Lele56g0790 392 SMART CBM 265 308 IPR006636 -
Lele56g0790 392 MobiDBLite consensus disorder prediction 79 104 - -
Lele56g0790 392 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Lele56g0790 392 MobiDBLite consensus disorder prediction 79 118 - -
Lele56g0790 392 FunFam UV excision repair protein RAD23 1 80 - -
Lele56g0790 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 158 201 IPR015940 -
Lele56g0790 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 345 386 IPR015940 -
Lele56g0790 392 Pfam UBA/TS-N domain 348 383 IPR015940 -
Lele56g0790 392 Pfam UBA/TS-N domain 163 198 IPR015940 -
Lele56g0790 392 SUPERFAMILY UBA-like 329 390 IPR009060 GO:0005515
Lele56g0790 392 Gene3D - 340 387 - -
Lele56g0790 392 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele56g0790 392 FunFam UV excision repair protein RAD23 B 258 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0790 Lele-ChrLele56 6012060 6017209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0790 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.10e-10 55.8