Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0780 ATGGTGGGGCAAAATGCAACGCAGTGGCTTGGAGGTATGGTGGCAATTGTAATAAACTTTAAAACCAGATCTCTAAAGATAGGGATTATGAACGTCATGAATCAGGAATTGTTCCAGGAAAGGGATAGACTTAAGATTGGTATCTGCACCGGACCGCTTCACCATCGTGAACATGGATTCATCGAGGATTACTGGCTGCTTTACGTTGTTGCTGGTGGAGTGCCTGTTTACAAACTGACCACTTATCTTGCTGTGATCAGTGTTTTGTGTTTCTGGGCTGAACAATTTTTCTGGGCGGTTGTTTTTGCCACCGGAGCAGCCCTGCAATTCTTGTACGTGATATCGATCATTGACAGGACACTTAGGTGGGAGATACTCACTGCCATTTGCGTTTCTGTTATTGCATGTTCGAAGATCGGCAACAATGAGTGTTTGCTTTGCTGTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTAGTCCGATTCTTTAACAAGTATGCCTATGTTCAGATAGCTGTTAATGGTAAAAGCTTTCGCCGTTCAGCAAGGGATGCCTGGGAGTTACTCCAGTCAACTGGTGTTGAAGCACTCGTAGCATATGACTGTTCAGGCGCTGTCCTGCTTATGGACGCTATCTGTGGTGGTTTGATAACCGGAACAAGCTCCGGTGTTTGCGCGTGGGTAGGAGTGGCCATGGTTGTGGTGGAAAGTGCTGGGACATCCATATATATCTGCTATGCGGAGGACCCATTATTGATTCGCAGATGGGACACAGAATTTTTCAACCAGATGTCTGAGACACTTCACCAGAGGCTTCAACATAGGAGTGTTCGAGTAAGGGAAGTTCTAACCCACTCACAACCTGAGTACCGTTGGGTCAATGATCACGAACATCCGATCAATGACCAAAGAAGGGCTTGTAATTCTCCAATGGAGGATAATGAACTACATGTTATTGTTGAGGGTATAACAACGCATTATGATGAATTATTTAGGTTAAAAAGCATAGGAACAAAGGCTGATGTATTTCACATGCTGTTTGGTATGTGGAAGAAGACGCCTGCTGAAAGATGTTTTCTGTGGTTAGGTGGATATTCCTACCATCTGAACTACTTCAGAATCTTTGTAGGCTCCCTCAGAATCATTTGTCATTCAGTGGTTGGAAATGACAATGATGAACTGCATATTGCTAGTGTGGCTGTTACATCACATTACGATGAATTATTCAGATTAAAGAACATAGGCATAAAGGCCCATGTATTTCACATCCTCACTACCAGAGAAAAGGCTTTTTGCGGTTGTGGATTCCGATCATATGAACTTCTCAAGATAATGAGAGACCAACTTGAGCCATTAACATATGAGCAATTGGTGGGCTTGTATAATCTACAGCAGTCTTCAGTTCAAGCCGAGGATGCTTTTTCACAAGGCACGGAGGCACTGCAACAATCTCTTTTGAAATTACTTTCGTCAGGCTCGCTCGTGGATCAAATAGAACTTTCTATGAGTAAGCTTCACGCATTGGAGGCAATTCTTCATCAGGCTGATCTCTTGAGGCAACAAACACTGAAACAGTTGCAAACAATATTGACCATGCCACAAGTAGCACGAGCACCTGCTTGTCATCAATGA 1632 0.435 MVGQNATQWLGGMVAIVINFKTRSLKIGIMNVMNQELFQERDRLKIGICTGPLHHREHGFIEDYWLLYVVAGGVPVYKLTTYLAVISVLCFWAEQFFWAVVFATGAALQFLYVISIIDRTLRWEILTAICVSVIACSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVNGKSFRRSARDAWELLQSTGVEALVAYDCSGAVLLMDAICGGLITGTSSGVCAWVGVAMVVVESAGTSIYICYAEDPLLIRRWDTEFFNQMSETLHQRLQHRSVRVREVLTHSQPEYRWVNDHEHPINDQRRACNSPMEDNELHVIVEGITTHYDELFRLKSIGTKADVFHMLFGMWKKTPAERCFLWLGGYSYHLNYFRIFVGSLRIICHSVVGNDNDELHIASVAVTSHYDELFRLKNIGIKAHVFHILTTREKAFCGCGFRSYELLKIMRDQLEPLTYEQLVGLYNLQQSSVQAEDAFSQGTEALQQSLLKLLSSGSLVDQIELSMSKLHALEAILHQADLLRQQTLKQLQTILTMPQVARAPACHQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0780 543 Pfam Seed dormancy control 303 364 IPR025422 GO:0006351|GO:0043565
Lele56g0780 543 ProSiteProfiles DOG1 domain profile. 282 543 IPR025422 GO:0006351|GO:0043565
Lele56g0780 543 PANTHER TRANSCRIPTION FACTOR TGA9 391 538 - -
Lele56g0780 543 Pfam Plasma-membrane choline transporter 112 222 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0780 Lele-ChrLele56 5945290 5956251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0780 363 538 bZIP Transcription Factor Family AT1G68640 50.251 1.88e-34 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0650 53 16661864 16665299 Lele56g0780 56 5945290 5956251 hybridization
Lele54g0660 54 13526602 13533782 Lele56g0780 56 5945290 5956251 hybridization