Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele56g0777 | ATGCACCCCCACCTGATGTTGGGGTTCTCCGATTATATTCAAGCATTAGAATCTGAACGCCGTAAAATCCACGTCTTCTCCAAAGAGCTTCCTCTTTCCTTGGAGCTCGTTACCCAAGCCTGTAGACTACAGTTGCGTGGAAGGACGACGTCGGAGGAGCAGAATTTGAACCGGCAATCAGAGTGTTCATCAGGACAGACATCATCAGAAGGACCTGTTTTGGAGTTCATACCTCTAAAGAAAAGACCATCCTCGGATTGTGGGGAAGAAGACGAAGAAGAAAATGAGCAACACTCGCATAAACTCAAGATTGCCAAGGATAATAATAACAACACTGATAAGAAAAAATCAGAATGGCTTAGATCCGTACAACTCTGGAATCCACAATCCCCAGTTAAAGAGGGTATTCCTAGGAAAACGTCGGTGTCGGAATTAAACAGAGACGGTGGAGCTTTCCGGCCATTCCACAGGGAAGCGAGTGTAGGAAAAACTACCGTATTAACATCCAAAGCATCATCTTCGCCTGCGCCGGCGCATCCTGTCGCCGGAAGCAACAAGAGAGAAGAGAAAGAAGGACATAATAATAATAAAAGGAATAAACAACGACGGTGCTGGTCTCAGGAGCTGCATAAGCGCTTCGTGAACGCCCTTCAGCAACTTGGTGGAGCAGATTCTGCAACACCGAAGCAGATAAGGGAACTTATGAAGGTTGATGGATTAACAAATGATGAAGTGAAGAGTCATTTACAGAAATTTCGATTGCACACGAAGAGGCCAAGCCCATTGATTCAGAACAATAATGGCGATTCACAAGCGGCTCCATTTGTAATCGTGGGGAACTTCATAGTGGGGCCGCCGGAACATGCGGCGGCGGTGCCTGGGAATTATGCTCCGGTGACGTCAGATGCAGCTGCGTTGGCACGGGAGGCGGTTCCGACGAAGGGTCAGGGAAGGCAATTACGTTCTAATTCAGAAGACAGCGAAGTGGCGGATCATGCAAATTCACCAACTTCGTCTTCTTCAACACATACCACCACAGCTTCCCCTCGTTATAAATCTATTTGA | 1065 | 0.4723 | MHPHLMLGFSDYIQALESERRKIHVFSKELPLSLELVTQACRLQLRGRTTSEEQNLNRQSECSSGQTSSEGPVLEFIPLKKRPSSDCGEEDEEENEQHSHKLKIAKDNNNNTDKKKSEWLRSVQLWNPQSPVKEGIPRKTSVSELNRDGGAFRPFHREASVGKTTVLTSKASSSPAPAHPVAGSNKREEKEGHNNNKRNKQRRCWSQELHKRFVNALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTKRPSPLIQNNNGDSQAAPFVIVGNFIVGPPEHAAAVPGNYAPVTSDAAALAREAVPTKGQGRQLRSNSEDSEVADHANSPTSSSSTHTTTASPRYKSI | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele56g0777 | 354 | FunFam | Myb family transcription factor | 199 | 257 | - | - | |
Lele56g0777 | 354 | MobiDBLite | consensus disorder prediction | 49 | 71 | - | - | |
Lele56g0777 | 354 | Pfam | Myb-like DNA-binding domain | 202 | 251 | IPR001005 | - | |
Lele56g0777 | 354 | MobiDBLite | consensus disorder prediction | 49 | 113 | - | - | |
Lele56g0777 | 354 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 9 | 332 | IPR044787 | GO:0003700|GO:0006355 | |
Lele56g0777 | 354 | MobiDBLite | consensus disorder prediction | 82 | 113 | - | - | |
Lele56g0777 | 354 | MobiDBLite | consensus disorder prediction | 308 | 354 | - | - | |
Lele56g0777 | 354 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 200 | 255 | IPR006447 | GO:0003677 | |
Lele56g0777 | 354 | MobiDBLite | consensus disorder prediction | 183 | 202 | - | - | |
Lele56g0777 | 354 | Gene3D | - | 199 | 257 | - | - | |
Lele56g0777 | 354 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 197 | 257 | IPR017930 | - | |
Lele56g0777 | 354 | MobiDBLite | consensus disorder prediction | 316 | 354 | - | - | |
Lele56g0777 | 354 | SUPERFAMILY | Homeodomain-like | 199 | 258 | IPR009057 | - | |
Lele56g0777 | 354 | MobiDBLite | consensus disorder prediction | 166 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele56g0777 | Lele-ChrLele56 | 5918103 | 5919596 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele56g0777 | 11 | 299 | G2-like Transcription Factor Family | AT1G68670 | 45.283 | 9.34e-67 | 213 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Lele56g0777 | Myb_DNA-binding | 1.9e-05 | CL0123 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele53g0654 | 53 | 16694767 | 16696251 | Lele56g0777 | 56 | 5918103 | 5919596 | hybridization | |
Lele54g0664 | 54 | 13564508 | 13568969 | Lele56g0777 | 56 | 5918103 | 5919596 | hybridization |