Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0777 ATGCACCCCCACCTGATGTTGGGGTTCTCCGATTATATTCAAGCATTAGAATCTGAACGCCGTAAAATCCACGTCTTCTCCAAAGAGCTTCCTCTTTCCTTGGAGCTCGTTACCCAAGCCTGTAGACTACAGTTGCGTGGAAGGACGACGTCGGAGGAGCAGAATTTGAACCGGCAATCAGAGTGTTCATCAGGACAGACATCATCAGAAGGACCTGTTTTGGAGTTCATACCTCTAAAGAAAAGACCATCCTCGGATTGTGGGGAAGAAGACGAAGAAGAAAATGAGCAACACTCGCATAAACTCAAGATTGCCAAGGATAATAATAACAACACTGATAAGAAAAAATCAGAATGGCTTAGATCCGTACAACTCTGGAATCCACAATCCCCAGTTAAAGAGGGTATTCCTAGGAAAACGTCGGTGTCGGAATTAAACAGAGACGGTGGAGCTTTCCGGCCATTCCACAGGGAAGCGAGTGTAGGAAAAACTACCGTATTAACATCCAAAGCATCATCTTCGCCTGCGCCGGCGCATCCTGTCGCCGGAAGCAACAAGAGAGAAGAGAAAGAAGGACATAATAATAATAAAAGGAATAAACAACGACGGTGCTGGTCTCAGGAGCTGCATAAGCGCTTCGTGAACGCCCTTCAGCAACTTGGTGGAGCAGATTCTGCAACACCGAAGCAGATAAGGGAACTTATGAAGGTTGATGGATTAACAAATGATGAAGTGAAGAGTCATTTACAGAAATTTCGATTGCACACGAAGAGGCCAAGCCCATTGATTCAGAACAATAATGGCGATTCACAAGCGGCTCCATTTGTAATCGTGGGGAACTTCATAGTGGGGCCGCCGGAACATGCGGCGGCGGTGCCTGGGAATTATGCTCCGGTGACGTCAGATGCAGCTGCGTTGGCACGGGAGGCGGTTCCGACGAAGGGTCAGGGAAGGCAATTACGTTCTAATTCAGAAGACAGCGAAGTGGCGGATCATGCAAATTCACCAACTTCGTCTTCTTCAACACATACCACCACAGCTTCCCCTCGTTATAAATCTATTTGA 1065 0.4723 MHPHLMLGFSDYIQALESERRKIHVFSKELPLSLELVTQACRLQLRGRTTSEEQNLNRQSECSSGQTSSEGPVLEFIPLKKRPSSDCGEEDEEENEQHSHKLKIAKDNNNNTDKKKSEWLRSVQLWNPQSPVKEGIPRKTSVSELNRDGGAFRPFHREASVGKTTVLTSKASSSPAPAHPVAGSNKREEKEGHNNNKRNKQRRCWSQELHKRFVNALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTKRPSPLIQNNNGDSQAAPFVIVGNFIVGPPEHAAAVPGNYAPVTSDAAALAREAVPTKGQGRQLRSNSEDSEVADHANSPTSSSSTHTTTASPRYKSI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0777 354 FunFam Myb family transcription factor 199 257 - -
Lele56g0777 354 MobiDBLite consensus disorder prediction 49 71 - -
Lele56g0777 354 Pfam Myb-like DNA-binding domain 202 251 IPR001005 -
Lele56g0777 354 MobiDBLite consensus disorder prediction 49 113 - -
Lele56g0777 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 332 IPR044787 GO:0003700|GO:0006355
Lele56g0777 354 MobiDBLite consensus disorder prediction 82 113 - -
Lele56g0777 354 MobiDBLite consensus disorder prediction 308 354 - -
Lele56g0777 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 255 IPR006447 GO:0003677
Lele56g0777 354 MobiDBLite consensus disorder prediction 183 202 - -
Lele56g0777 354 Gene3D - 199 257 - -
Lele56g0777 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 257 IPR017930 -
Lele56g0777 354 MobiDBLite consensus disorder prediction 316 354 - -
Lele56g0777 354 SUPERFAMILY Homeodomain-like 199 258 IPR009057 -
Lele56g0777 354 MobiDBLite consensus disorder prediction 166 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0777 Lele-ChrLele56 5918103 5919596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0777 11 299 G2-like Transcription Factor Family AT1G68670 45.283 9.34e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele56g0777 Myb_DNA-binding 1.9e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0654 53 16694767 16696251 Lele56g0777 56 5918103 5919596 hybridization
Lele54g0664 54 13564508 13568969 Lele56g0777 56 5918103 5919596 hybridization