Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0774 ATGGATACGAGTAGTTGCGTAGATGAAAGTACCACGAGTGATTCGGTCTCCATATCGCTTTCTCCGGCGATAACAGTATCGCCGATGATGAAAGTGACGCTTCAGAAGTCATCGCCGCCGCCTCCCAATAGTCTCTGCCGGGTTGGCAGCGGCGCAAGTACTATTCTGGACTCCGATGGAGGTCTTGAGGCTGAGTCCCGAAAGCTGCCGTCGTCGAAATACAAGGGAGTGGTGCCACAGCCGAATGGACGATGGGGGGCCCAGATATATGAGAAGCACCAGCGTGTTTGGTTGGGCACGTTCAACGAGGAAGATGAAGCCGCCAGGGCCTACGACATCGCCGCCCAGAGGTTCCGCGGCAAGGACGCCGTCACCAACTTCAAGTCCCTCAACAGCAACAGCTCCGACGTCGATGCGTCCGACGATGATGTCGAGACGGAGTTCCTCAACTCGCATTCCAAGGCCGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGAAGAACTCGAGCAGAGCAAGCGCAACAGCAGGTTGGTCGGAGGAAGCCACGGCAAGTCGAGGAAGGATGGCGGCGCAGGGGCGTGCTTCGAGCGGACACAGAAAGCGCGCGAGCAGCTTTTCGAGAAAACCGTCACACCCAGCGACGTGGGGAAGCTGAACCGATTGGTGATACCCAAACAGCACGCGGAGAAGTACTTCCCGTTGCAAAGCGGAGGCACTGCTTCTTGCCCGACGGCGTCTGCCACGAAGGGTGTGCTTTTGAATTTCGAGGACGATGGAGGGAAAGTGTGGAGGTTTCGGTACTCGTACTGGAACAGTAGCCAGAGCTACGTTCTAACAAAAGGCTGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGATACGGTCATTTTCCAGCGGTCAACCGGACCGGACCGGCAGCTCTACATTGACTGGAAAACCAGAAATAATCAGGGAGGAGTCGGGGGTGCAGGGACCGGAATGGAGGGGTTGTACAACCCGGCGGGACCAGTGGTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGGGTAAACATCCTGAAAATGCCGCCGTCAGATTCCGTAGGTAGTAGCTGCCACGGCAAGAGGAAAGAGATGAAGCTGTTGACGTTAGAATTTAGCAAGAAGCCAAAGATAATTGGAGCTTTGTAA 1179 0.5573 MDTSSCVDESTTSDSVSISLSPAITVSPMMKVTLQKSSPPPPNSLCRVGSGASTILDSDGGLEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKSLNSNSSDVDASDDDVETEFLNSHSKAEIVDMLRKHTYNEELEQSKRNSRLVGGSHGKSRKDGGAGACFERTQKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKYFPLQSGGTASCPTASATKGVLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVIFQRSTGPDRQLYIDWKTRNNQGGVGGAGTGMEGLYNPAGPVVEPVQMVRLFGVNILKMPPSDSVGSSCHGKRKEMKLLTLEFSKKPKIIGAL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0774 392 Gene3D - 197 325 IPR015300 -
Lele56g0774 392 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Lele56g0774 392 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Lele56g0774 392 SUPERFAMILY DNA-binding pseudobarrel domain 206 317 IPR015300 -
Lele56g0774 392 CDD AP2 72 127 IPR001471 GO:0003700|GO:0006355
Lele56g0774 392 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Lele56g0774 392 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Lele56g0774 392 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 364 IPR044800 GO:0003700
Lele56g0774 392 SMART B3_2 208 319 IPR003340 GO:0003677
Lele56g0774 392 MobiDBLite consensus disorder prediction 170 193 - -
Lele56g0774 392 ProSiteProfiles B3 DNA-binding domain profile. 208 319 IPR003340 GO:0003677
Lele56g0774 392 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Lele56g0774 392 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Lele56g0774 392 Pfam B3 DNA binding domain 208 316 IPR003340 GO:0003677
Lele56g0774 392 CDD B3_DNA 207 304 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0774 Lele-ChrLele56 5899398 5900576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0774 5 392 B3 DNA Binding Superfamily AT1G25560 59.900 2.77e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lele56g0774 B3 1.2e-28 CL0405