Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0768 ATGAAAAGAGAGGAAGATTATGGGCAGTGTTCTTCACAAGCCATAAACAACTTGCACAGCTATCAAGATCAGTTACTGCTGCAACAGATGCATCAGCAACAGAACACTATGTTCCCGGAAGTTTCTCCGTGGAATATCCCTCCGGTTCATCACTCCTTCAACCAGCCGGTCCATCATCATCACTTTTCCAATCCGGTCCGAGTCGACCACCACCATGACCCGTTTCTTCATCTTCCTCCTCCAACTCCTCCAGCTGCTGGGCCCTATGCTAGTTTGTTTAACAGGAGGGTTCCTTCTCTGCAGTTTGCGTACGATGGTTCACCTTCCGACCATCTCCGGCTCTTATCTGAGGCTCTTGGACCCATGGTTCAACCCGGTTCAGCCCCATTCGGCCTCCAAGCCGAGCTGGGCAAGATGACAGCTCAAGAAATCATGGACGCTAAGGCCCTTGCAGCGTCCAAGAGTCACAGTGAAGCTGAACGAAGACGCAGAGAAAGAATCAATAACCATCTTGCCAAACTTCGCGGCTTATTGCCCAGCACAACCAAAACGGATAAAGCATCGTTGCTGGCGGAAGTGATTCAGCATGTGAAGGAACTGAAGAGGCAGACGTCGTTGATAGCGGAAACAAGTCCGGTGCCGACGGAGGTGGATGAGCTGACGGTGGACACTGCCGACGAGGATGACGACGGGAAGTTTGTGATCAAAGCGTCATTCTGCTGTGAGGATCGGTCAGATCTGTTGCCGGAACTGATAAAGACATTGAAAGCAATGAAGCTAAGAACCCTGAAAGCAGAGATCACCACAATTGGTGGACGTGTGAAGAATGTGTTGTTCATTACCGGGGAAGAAGATGGGGATTCTCAGAGCAGTGGAGAGCTTCATCATCATAATCATCAGAACCAGATGTTGCAGCAACAACAATATTGTATCAACTCGATACAAGAAGCTCTTAGGGCAGTGATGGAGAAGAGTAATGGTGGGGATGAGACAACAAGTGGGGCTGTTAAGAGACAAAGGACTAGTAACCTTAATATCCTCGAACACAGAACCACCTCTCTGCTTCATGAAGCTGGCCCCAACAAAGGTCCATCTGAACCGATTTCCATGGCTTCTCAAGGGGATTCCTTTGTGACCCACGTCTCAGATCCAAGATTCAGTCACTAA 1167 0.4919 MKREEDYGQCSSQAINNLHSYQDQLLLQQMHQQQNTMFPEVSPWNIPPVHHSFNQPVHHHHFSNPVRVDHHHDPFLHLPPPTPPAAGPYASLFNRRVPSLQFAYDGSPSDHLRLLSEALGPMVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRGLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDTADEDDDGKFVIKASFCCEDRSDLLPELIKTLKAMKLRTLKAEITTIGGRVKNVLFITGEEDGDSQSSGELHHHNHQNQMLQQQQYCINSIQEALRAVMEKSNGGDETTSGAVKRQRTSNLNILEHRTTSLLHEAGPNKGPSEPISMASQGDSFVTHVSDPRFSH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0768 388 SMART finulus 157 206 IPR011598 GO:0046983
Lele56g0768 388 FunFam transcription factor bHLH30 146 209 - -
Lele56g0768 388 CDD bHLH_AtAIG1_like 146 223 - -
Lele56g0768 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Lele56g0768 388 MobiDBLite consensus disorder prediction 351 388 - -
Lele56g0768 388 PANTHER TRANSCRIPTION FACTOR BHLH30 34 345 IPR045847 GO:0003700|GO:0006355
Lele56g0768 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 207 IPR036638 GO:0046983
Lele56g0768 388 MobiDBLite consensus disorder prediction 366 388 - -
Lele56g0768 388 Pfam Helix-loop-helix DNA-binding domain 154 200 IPR011598 GO:0046983
Lele56g0768 388 Gene3D - 146 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0768 Lele-ChrLele56 5822756 5825532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0768 11 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.121 4.37e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g0768 HLH 3.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0663 53 16803872 16807979 Lele56g0768 56 5822756 5825532 hybridization
Lele54g0672 54 13668141 13670616 Lele56g0768 56 5822756 5825532 hybridization