Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0729 ATGGGTATCTTTCTCGTCCCACTTTTAGCTGGGAATCATAAAAAAGACTCTTGGTGTACTTGTTCAGGAGAGTTGGATATGTCTGACAAAGAAAATTTTGAGATAGATAGAAACTTGGATCATGTGAGTTATTCATCTAGTATGCCCTCGGATTGGAGATTTGGGGTTCCTAATCTTGCAAATACATCAGTGGGTTTGGTGGATTCATATGTTCAAAGCTTCTGGGATCATCCTATCAGTTCCCAAAACTTGAGCTCACGTGACATCATTGTGCAGCAGAACAATGGTAGTTCCTCAAGCCCAATTGGAAATAGAAAAGATGGCCTTGCCTTGGCTGGTCATGATAGAACACTTGAAATGGGTTGGAACCCAACAAGTTCTATTTTAAAAGGGGATGCTGCTTTCTTACCAAACAGACCAACAATCTTCCCGCAGAGTTTGTCTCAGATTCCCACCGATTCTGCCTTTATTGAGCGAGCTGCAAGATTCTCATGCTTCAGTCAGTTCAATGGAGGGAACTTTGGTAGTATGATGTACTCATTTGGGATTCCTCAATCCATGATGGGTCTGTATGCTGGACGGGATGTTCTTGCAGGCCATGGCTTAAAATCAGCTCATGGAGCAGCACGATCTGAAGAAAGTGCTCAGGATGTTGTAGGTGAAGCTGCAAAAGATGTGTCTGTGTCTCCATCTTCTGTTCAGAATTTGGCCACTAAAGGAAGTCCACTCAAGAATGACAAGAGAAGTGAAAGCCTAGTGACATCTCAAGATGAAGCAAAACAGGTTCTTGGGAGGTCTACTAATAATGAGTCTGATAGAGCCGAATCAAGTGGTGGTGGTGGTGATGATGATGATGCTGGTGTTCAAAATGATATGCCTATGTTGGAGGGTACAAGTGGGGAGCCTTCTAACAAAGGACTAAACGCAAAGAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATGAAAAAGCCAATGGAGGTTCTGAACCACCAAGTGAGGCTGCAATGGAGAATTCCGAGAGCCGACAGAAGGGAGACCAACAACCAACTTCAACAACCAAGACTTCTGGGAAGAATACCAAACAGGGGTCTCAAGCTTCTGATCCACCAAAGGAGGAATACATACATGTTAGGGCTCGCAGGGGTCAAGCAACGAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGCGAAAGGATGAAATTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTGACTGGCAAGGCGGTTATGCTAGATGAAATCATTAACTATGTACAGTCACTCCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACTGTAAATTCACGGCTGGATTTTAATCTTGAAGGACTTATTGCCAAAGATATGCTTCAGCAACGGCCTGGCCCCTCATCTGCACTGAGGTTTTCTCCAGAAATGCCTATGGTTTTTCCGACTTTACATCCATCTCAACCAGGCCTTCTACAGTCAAATATTCCTGGCATAGCGAACTCATCTGATATACTTCGAAGAACCATTCATCAACAGTTAACTCCTGTGGTTGGAGGATTCAAGGATCATAATCAGCTACCTGAGATGTGGGAGGATGAACTGCACAATGTTGTACAGATGAGCTATGCACCAACTGCTCCACCGAGTAGTCAAGAGGATGATGGCAATGCAACAGCAAGTGAGATGAAGGTTGAACTATGA 1713 0.4396 MGIFLVPLLAGNHKKDSWCTCSGELDMSDKENFEIDRNLDHVSYSSSMPSDWRFGVPNLANTSVGLVDSYVQSFWDHPISSQNLSSRDIIVQQNNGSSSSPIGNRKDGLALAGHDRTLEMGWNPTSSILKGDAAFLPNRPTIFPQSLSQIPTDSAFIERAARFSCFSQFNGGNFGSMMYSFGIPQSMMGLYAGRDVLAGHGLKSAHGAARSEESAQDVVGEAAKDVSVSPSSVQNLATKGSPLKNDKRSESLVTSQDEAKQVLGRSTNNESDRAESSGGGGDDDDAGVQNDMPMLEGTSGEPSNKGLNAKKRKRSGQDSDNEKANGGSEPPSEAAMENSESRQKGDQQPTSTTKTSGKNTKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFNLEGLIAKDMLQQRPGPSSALRFSPEMPMVFPTLHPSQPGLLQSNIPGIANSSDILRRTIHQQLTPVVGGFKDHNQLPEMWEDELHNVVQMSYAPTAPPSSQEDDGNATASEMKVEL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0729 570 MobiDBLite consensus disorder prediction 547 561 - -
Lele56g0729 570 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 265 479 IPR024097 GO:0006355
Lele56g0729 570 Gene3D - 380 455 IPR036638 GO:0046983
Lele56g0729 570 MobiDBLite consensus disorder prediction 306 320 - -
Lele56g0729 570 MobiDBLite consensus disorder prediction 255 275 - -
Lele56g0729 570 MobiDBLite consensus disorder prediction 227 242 - -
Lele56g0729 570 FunFam Basic helix-loop-helix transcription factor 380 452 - -
Lele56g0729 570 Pfam Helix-loop-helix DNA-binding domain 386 434 IPR011598 GO:0046983
Lele56g0729 570 SMART finulus 389 439 IPR011598 GO:0046983
Lele56g0729 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 383 433 IPR011598 GO:0046983
Lele56g0729 570 Coils Coil 430 450 - -
Lele56g0729 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 381 452 IPR036638 GO:0046983
Lele56g0729 570 MobiDBLite consensus disorder prediction 225 371 - -
Lele56g0729 570 MobiDBLite consensus disorder prediction 321 367 - -
Lele56g0729 570 CDD bHLH_AtBPE_like 373 458 - -
Lele56g0729 570 MobiDBLite consensus disorder prediction 547 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0729 Lele-ChrLele56 5472247 5476136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0729 25 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.216 1.37e-107 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g0729 HLH 7.4e-06 No_clan