Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0704 ATGCCTCTTTTCACGTCTGAGCCATCTGGCAATTCCTATATTATTGTAATCCTTTCGTACAGATTGAGAGAAGCATCTTTGGCGTGGTGGTGCTGTGCTTCTGCAGATTTTCTGATCTCTAGGTGTTCGTCTTTTTGCTTAGTTTATTCTCTTTCGAAGAAAGGTTTGGAATTTGAGGCAAATGTTTCAATGCCCAGCTCGAGGCAATCCTTCTGCATCTCTTCTTCTTCTTCTTCTTCTTTGTTTTGTATCATTCTCTTCCACTTCATTTTTCTCCATGGCATAGCATTCTCTGCTAATCATGAAGTATCTCTTCTCTTCTCTTGGCTTCATAGCTCTGCTTCACCACCACCTCCATCTTTCTCCAAATGGAACATCCTTGACGCCAACCCATGCAATTGGACCTTCTTAACATGTTCTTCACAAGGTTTTGTCACTGAAATCAATATACAATCCGTCCCTCTAGAGCTTCCTTTGCCTTCAAATCTCTCTTCCTTTTCCCATCTTCAAAAATTCGTTATTTCTGATGCCAATCTTACTGGAACCATGCCTATCAATATTGGTGACTGCTTTTCCCTCACTGTCATTGACCTGAACTCCAATAATCTTGTAGGGTCCATCCCTGCAAGTATAGGTAAGCTTCAGAACTTGGAGAGCTTGTCTCTGAACAGTAACCAGCTTACAGGAAAAATCCCAGTTGAGTTAGGAAACTGCATTAGCCTTAAAAGTATCCTCCTTTTTGATAACCAGCTAAGTGGTGTTATCCCATCTGAGATAGGGAAGTTGTCAAAACTTGAGATTCTTAGAGCAGGAGGAAACAAAGATTTAGAAGGGAAAATCCCTGAAGAGATTGGAGAATGTAGCAATTTTACTGAACTGGGGCTTGCTGATACTGGTATATCAGGCTCATTGCCAGCTTCATTGGGAAAACTGAGCAAGCTTCAAACTTTGTCCATCTACACTACAATGCTATCGGGTGAGATTCCAGCAGAGTTAGGTAACTGCTCTGAACTTGTTGATTTATTCCTATATGAAAATAGTCTATCTGGGTCTATTCCACTTGAGCTGGGTAAGCTTCAAAAGCTGGAGCAATTGTTTTTATGGCAGAATAGTCTTATGGGAGCTATCCCAGAAGAGATTGGGAACTGCACAAGCTTGAAAAGAATTGATCTTTCTTTGAATTCTCTATCTGGCACTATACCTTTATCTTTTGGGGGTCTGTTAGAACTTGAGGAGTTCATGATAAGTGATAATAATGTTTCTGGGTCAATACCTGCAAGTCTTTCAAATGCCTCATTTCTGCAACAGTTGCAAGTTGACACAAATCAGCTCTCAGGTTTGATTCCCCCAGAGCTTGGGAAGTTATCAAAGCTCACAGTTTTCTTTGCTTGGCAAAACCAACTTGAAGGAAGTATTCCTTCTACTCTGGGAAATTGTAGTAACCTACAAGCACTAGACTTCTCTCACAATGAACTTACTGGTAGCATTCCTCCTGGCCTATTTCAACTTCAAAACCTTTCAAAATTGCTCTTAATTTCTAATGATATTTCAGGTTCAATCCCATCAGAAATAGGCAGTTGTAGTTCTCTTATAAGACTGAGGCTTGGGAAGAATAGGATTACTGGTGGGATCCCTAAGACAATAGGGAATCTCAAAAACCTGAACTTTTTAGACTTCAATGAGAATCATCTTTCTGGGCAAGTCCCAGATGAGATTGGCAACTGCACCGAACTGCAAATGATAGACTTCAGCAACAACAACTTAGAAGGTCCATTGCCTAATTCCTTGTCATCACTATCTTTGGTCCAAGTATTTGATGGATCTTCTAACAGATTCTCAGGTCAAATACCAGAAATTTTAGGCCGTCTTGTTTCACTGAATAAACTAATCCTGGGTAGAAACTTGTTTTCTGGACAAATTCCTGCATCATTGGGCCAATGTTCAAGTCTCCAAATGCTTGATCTTAGTGGCAATCAGCTCACAGGAAACATTCCACCAGAGCTTGGTCTTTTAGACACCCTTGAAATTGCTCTTAACCTGAGTTGCAATTCTCTAAGTGGCCCAGTTCCAGATCAGATTTCTGCTCTCACCAAGCTTTCTATGTTAGACCTGTCTCATAACCAGTTAGAGGGAAGTTTGAACTCACTTGCAGGGCTAGATAATCTTGTCTCTCTCAATATTTCCTACAACAATTTCACAGGTTATCTACCAGATAATAAGCTTTTTAGGCAATTATCTCCAAAGGACCTAACTGGGAATGAAGGGCTCTGCTCATCGGGTAAAGACTCATGCTTTGTGAGTGCTTCAAGCATGGCGCTGAATGGAAGTGAAGCGAGGAAGTCGCGAAGGATTAAGCTAGCTATCGGTTTGCTAGTAGTCTTAACAGTACTACTGACAATAATGGGGATAATTGCAGTGATAAAGGCAAGAAGAACCATTAGAGATGATGATTCAGAACTAGGGGACCCATGGCCATGGCAATTCATTCCATTCCAGAAGCTAAACTTTTCAGTGGAGCAGATATTGAGACGTTTAGTTGAAGGAAATATAATTGGCAAAGGATGTTCTGGTGTTGTTTATCGCGCTGAAATGGACGATGGTGAAGTCATTGCAGTGAAGAAACTGTGGCCCACAACAATGGATCATGTAGGAGGAGATGGATTCAAGGATGATAAAAGTGGAATTCGCGACTCATTCTCAACCGAGGTGAAAACTCTTGGCTCAATCCGTCATAAGAACATTGTTAGATTCTTAGGATGTTGTTGGAATAAGAACACAAGATTGCTGATATATGATTATATGGCAAATGGGAGTCTAAGTAGTCTACTTCATGAGAAAACAGGAAATTGTCTGGAATGGGAATTCAGGTACAGAATCCTTTTAGGAGCTGCAGAAGGGCTTGCATATTTGCACCATGATTGTGTGCCTCCCATAGTTCATAGAGACATCAAAGCCAATAATATCCTCATTGGCATTGAGTTTGAGCCTTATATTGCAGACTTTGGCTTGGCTAAGCTAGTTGATGATGGCGGCTTCGGCAGGTCTTCTAATACAGTGGCTGGTTCTTATGGATACATTGCTCCAGAATATGGCTACATGATGAAAATCACGGAGAAGAGCGATGTTTATAGCCATGGAGTAGTTATGTTGGAAGTCTTGACGGGCAAGCAACCGATAGATCCGACGATACCAGAGGGCCAACATGTTGTTGATTGGGTAAGACAGAAAAGAGGGGTTGAAGTGCTTGATTCAAGCTTACTTTCAAGACCAGAATCAGAAATAGAGGAAATGATGCAAGCATTAGGCATAGCCTTGTTGTGTGTAAACTCATCCCCAGATGAGAGACCAACAATGAAAGATGTTGCAGCAATGCTCAAAGAAATCAAACAAGAAAGAGAAGAATATGCAAAAGTTGATGCACTCTTAAAGGGATCTCCTGCAAATGATCATCATGTCAAAGCAACATCTTCATCATTGCCAGTGCAAGCAGTGCAAAATTTGTACCCAGAAGGCAATAATAATACGATTTTCTCTGTATCTTCACTGCTTTATTCATCATCTTCTTCCAGTGCCAAAGTGGATTTGAAGCAGTGA 3594 0.409 MPLFTSEPSGNSYIIVILSYRLREASLAWWCCASADFLISRCSSFCLVYSLSKKGLEFEANVSMPSSRQSFCISSSSSSSLFCIILFHFIFLHGIAFSANHEVSLLFSWLHSSASPPPPSFSKWNILDANPCNWTFLTCSSQGFVTEINIQSVPLELPLPSNLSSFSHLQKFVISDANLTGTMPINIGDCFSLTVIDLNSNNLVGSIPASIGKLQNLESLSLNSNQLTGKIPVELGNCISLKSILLFDNQLSGVIPSEIGKLSKLEILRAGGNKDLEGKIPEEIGECSNFTELGLADTGISGSLPASLGKLSKLQTLSIYTTMLSGEIPAELGNCSELVDLFLYENSLSGSIPLELGKLQKLEQLFLWQNSLMGAIPEEIGNCTSLKRIDLSLNSLSGTIPLSFGGLLELEEFMISDNNVSGSIPASLSNASFLQQLQVDTNQLSGLIPPELGKLSKLTVFFAWQNQLEGSIPSTLGNCSNLQALDFSHNELTGSIPPGLFQLQNLSKLLLISNDISGSIPSEIGSCSSLIRLRLGKNRITGGIPKTIGNLKNLNFLDFNENHLSGQVPDEIGNCTELQMIDFSNNNLEGPLPNSLSSLSLVQVFDGSSNRFSGQIPEILGRLVSLNKLILGRNLFSGQIPASLGQCSSLQMLDLSGNQLTGNIPPELGLLDTLEIALNLSCNSLSGPVPDQISALTKLSMLDLSHNQLEGSLNSLAGLDNLVSLNISYNNFTGYLPDNKLFRQLSPKDLTGNEGLCSSGKDSCFVSASSMALNGSEARKSRRIKLAIGLLVVLTVLLTIMGIIAVIKARRTIRDDDSELGDPWPWQFIPFQKLNFSVEQILRRLVEGNIIGKGCSGVVYRAEMDDGEVIAVKKLWPTTMDHVGGDGFKDDKSGIRDSFSTEVKTLGSIRHKNIVRFLGCCWNKNTRLLIYDYMANGSLSSLLHEKTGNCLEWEFRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGIEFEPYIADFGLAKLVDDGGFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSHGVVMLEVLTGKQPIDPTIPEGQHVVDWVRQKRGVEVLDSSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMKDVAAMLKEIKQEREEYAKVDALLKGSPANDHHVKATSSSLPVQAVQNLYPEGNNNTIFSVSSLLYSSSSSSAKVDLKQ 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0704 1197 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 934 1143 - -
Lele56g0704 1197 Gene3D Phosphorylase Kinase; domain 1 831 933 - -
Lele56g0704 1197 Gene3D Ribonuclease Inhibitor 214 292 IPR032675 -
Lele56g0704 1197 SUPERFAMILY Protein kinase-like (PK-like) 822 1125 IPR011009 -
Lele56g0704 1197 FunFam Nuclear pore complex protein NUP107 99 254 - -
Lele56g0704 1197 Pfam Protein kinase domain 847 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0704 1197 ProSiteProfiles Leucine-rich repeat profile. 649 671 IPR001611 GO:0005515
Lele56g0704 1197 ProSiteProfiles Protein kinase domain profile. 845 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0704 1197 FunFam LRR receptor-like serine/threonine-protein kinase 597 672 - -
Lele56g0704 1197 SUPERFAMILY RNI-like 424 738 - -
Lele56g0704 1197 Gene3D Ribonuclease Inhibitor 399 495 IPR032675 -
Lele56g0704 1197 Gene3D Transferase(Phosphotransferase) domain 1 934 1145 - -
Lele56g0704 1197 Gene3D Ribonuclease Inhibitor 293 398 IPR032675 -
Lele56g0704 1197 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 274 497 - -
Lele56g0704 1197 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 498 592 - -
Lele56g0704 1197 SMART LRR_sd22_2 575 601 - -
Lele56g0704 1197 SMART LRR_sd22_2 479 508 - -
Lele56g0704 1197 SMART LRR_sd22_2 696 721 - -
Lele56g0704 1197 SMART LRR_sd22_2 214 235 - -
Lele56g0704 1197 Coils Coil 1118 1138 - -
Lele56g0704 1197 SMART serkin_6 845 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0704 1197 Pfam Leucine rich repeat 678 732 IPR001611 GO:0005515
Lele56g0704 1197 ProSitePatterns Protein kinases ATP-binding region signature. 851 874 IPR017441 GO:0005524
Lele56g0704 1197 PANTHER UNNAMED PRODUCT 431 1062 - -
Lele56g0704 1197 ProSitePatterns Serine/Threonine protein kinases active-site signature. 978 990 IPR008271 GO:0004672|GO:0006468
Lele56g0704 1197 SMART LRR_typ_2 359 383 IPR003591 -
Lele56g0704 1197 SMART LRR_typ_2 719 744 IPR003591 -
Lele56g0704 1197 SMART LRR_typ_2 623 647 IPR003591 -
Lele56g0704 1197 SMART LRR_typ_2 214 238 IPR003591 -
Lele56g0704 1197 SMART LRR_typ_2 479 503 IPR003591 -
Lele56g0704 1197 SMART LRR_typ_2 696 718 IPR003591 -
Lele56g0704 1197 SMART LRR_typ_2 648 671 IPR003591 -
Lele56g0704 1197 SMART LRR_typ_2 551 575 IPR003591 -
Lele56g0704 1197 Gene3D Ribonuclease Inhibitor 102 213 IPR032675 -
Lele56g0704 1197 ProSiteProfiles Leucine-rich repeat profile. 698 720 IPR001611 GO:0005515
Lele56g0704 1197 SUPERFAMILY L domain-like 106 466 - -
Lele56g0704 1197 PRINTS Leucine-rich repeat signature 650 663 - -
Lele56g0704 1197 PRINTS Leucine-rich repeat signature 696 709 - -
Lele56g0704 1197 FunFam Putative LRR receptor-like serine/threonine-protein kinase 677 762 - -
Lele56g0704 1197 Gene3D Ribonuclease Inhibitor 496 767 IPR032675 -
Lele56g0704 1197 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 828 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0704 Lele-ChrLele56 5273261 5277706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0704 97 1180 Receptor kinase-like Gene Family AT5G56040 47.589 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele56g0704 Pkinase 4e-41 CL0016