Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0686 ATGGCTGTGATTGCCTTGAAATGTCCCGAGATCCAAGTAGCTGTCGTGGATATCGCCGCCCCAAGAATCAATGCCTGGAACAGTGACCACCTCCCAATCTACGAGCCAGGCCTCGAAGAAGTGGTGAAGGAGTGCAGGGGAAGGAATCTTTTCTTTAGCACTGATGTGGAGAAGCATGTTGCAGAGGCTGATATAGTGTTCGTCTCCGTGAACACCCCAACAAAAACTCAAGGACTTGGAGCTGGCAAAGCAGCTGATCTCACCTATTGGGAGAGCGCTGCAAGAATGATCGCTGATGTTTCCAAATCTAACAAAATTGTTGTCGAGAAATCAACTGTTCCTGTGAAAACAGCTGAGGCAATTGAGAAGATCCTGACCCACAATAGGAAAGGAATCAATTTCACGATTCTGTCAAACCCAGAATTTCTCGCTGAGGGTACAGCGATTAAGGACCTAATGAGTCCTGATCGAGTCCTTATTGGAGGTAGGGAGACCCCAGAAGGTGCTAAGGCCATACAAACTTTGAAAGATGTTTATGCCCATTGGGTCCCCGTAGACAAAATCCTCTGCACCAACTTGTGGTCTGCTGAACTCTCAAAGCTTGCTGCCAATGCTTTTCTGGCACAAAGGATTTCTTCTGTGAATGCCATGTCAGCACTCTGTGAGGCAACTGGAGCTGATGTCACCCAGGTGTCACACGCAATTGGCACAGACTCAAGAATTGGACCCAAGTTTTTGAATTCAAGCGTTGGTTTTGGTGGATCTTGCTTTCAGAAGGATATTCTGAACTTGGTCTATATCTGTGAGTGCAATGGCCTTCCTGAGGTTGCAAATTACTGGAAACAGGTGATTAAGGTGAATGACTACCAGAAAACTCGGTTCGTGAACCGAGTTGTTTCCTCCATGTTTAACACTGTATCAGGTAAGAAAATTGCTGTTCTGGGCTTTGCTTTCAAGAAGGACACTGGTGATACAAGGGAGACACCAGCCATTGATGTGTGCCAGGGGCTATTGGGAGACCAGGCTCGTTTGAGCATATATGATCCACAGGTAACTGGAGATCAAATCACAAGGGATCTCTCAATGAATAAGTTTGATTGGGACCATCCTGCTCACCTGCAACCATCAAACCCAACTTCCATTAAGACAGTGTCTGTGGTTAGGGATGCCTATGAGGCAACAAAAGAGGCTCATGCTGTTTGCATTCTGACTGAGTGGGATGAGTTCAAGAAGCTTGATTACCAAAAAATTTCAGTTGCTATTGTCTGTTTTCATTATTTTGATTTGATCATCAGTGCTGCGTTGACGAAGGACTTGATAAGAATTAGAATGGGATTAAAACGGTGTTTTGAGGCCAGTGAATTTGAGGATCTTCCTTTCAATAAGGCAAAACGTTTGGAGTGCAACGAAAAGTTGGTTTCGTTTGCTGGTACTGATACCCCCAACAATGCTTCGGTGAAGCCTATTGCTTCAGGGAAAGATGAGGATGGCTTTTACAATATTCAATGGTATGACACAATAGAACCAGAAACTGTCACTGGAGCTGCACATGCTGGTGAGAAGGATATTGAGATCAGTGGCCACTTCAGTAGCAGTTATAGTGAGGATGGTTCTCGGGCAACATCATTGTCTGCTTCTTTAGATTCCTTGGAGTTTGATTTTCCACAGAAAGCAATGGTTCCTTTGGATGATGCCTATTCAGTTCTTGAGAACTTCCAGAGAAAACAAGTTCCTGTTGGACCAAATCATCAAGCCACCATTCCAGTCTGGAAGGGAAGAGGGAGTGAGGTATCCGTGTTGATAGGCACCTATGATGTTGGTGGCAATGAAGAGAAGTTTATGGGGACTTCTGTGATCTCAATGCCCAACTCGAGCTTCTATTCTTGTAATAGTCACAAGGATGAAGAAGGCAGAACAGAATGCAACTTCCTGGATCAAGACTCCATCAGATGTGTTCGACAGCATGTTCGGGAAGCACGTGAAAACTTGATGAATACTCTTGGAAATGAGATGTTTATCAACTTGGGGTTTGATCACATGGGAGAGGAGGTTGCACTCAAATGGAGTGAAGAAGAAGAAGATTTATTTCATGAAGTTGTCTACACGAATCCTGCAACATTGGGTAGAAACTTTTGGAAGGAGCTGTCAGCTGCATTTCCTTCTCGAACAAAGAAGGAAATTGTCAGCTATTATTACAATGTCTTTATGCTTCGGAGAAGGGCAGCTCAGAACAGATCAAGATTTCTCAATATTGACAGTGATGATGATGAATGTCCCACAAGCAATAATGTGGGCTTCTATGGTTTTGAAGTATCAGAAGAAGACTCTGCCATTGAGTCTCCTGACGATCAAGATGTCCATGAGGGAAACCAAGATAATTATTCTGATGATGATGGTGAAGATGACAACAGCTACAATGGAACTGATGGCGGTTTTGTTGGTATTGGCAGGTATGACAAGGGAAATGGCAGTGACTCCAACTCTCAGATTGAGAGCTTGTCTGAACCTTTACACCAAGACAATGAGACCCTGGGAATTTCAATTGGTTCAGGTGTTCAGGATGATTCCTGCATGTCCTTTGAGTGTCAGATCAATATGGATGAGCCCTGCCCCCAATATGGTCATGATGATGCTAGTCCTGCTTTGCATGCTAGTGGATTTAAATGTGACCAAAGCTCACTTATACCGGGCATACTTGATTTCTCCAGTGGTACTATGGAGCGTATTTATTTTTCAGAGCCTTGTGATGCTAAAGATTGGTACCCAGGGTACTCCACAAATGCAGCCTCTGACATCGACTTCTCGCCCACATCCAAATTAATTGAAGAGTTTCTGGGTCAAGTTACTCCAGATCGAAAGAACAAAAATGACTAA 2874 0.4402 MAVIALKCPEIQVAVVDIAAPRINAWNSDHLPIYEPGLEEVVKECRGRNLFFSTDVEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNRKGINFTILSNPEFLAEGTAIKDLMSPDRVLIGGRETPEGAKAIQTLKDVYAHWVPVDKILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCQGLLGDQARLSIYDPQVTGDQITRDLSMNKFDWDHPAHLQPSNPTSIKTVSVVRDAYEATKEAHAVCILTEWDEFKKLDYQKISVAIVCFHYFDLIISAALTKDLIRIRMGLKRCFEASEFEDLPFNKAKRLECNEKLVSFAGTDTPNNASVKPIASGKDEDGFYNIQWYDTIEPETVTGAAHAGEKDIEISGHFSSSYSEDGSRATSLSASLDSLEFDFPQKAMVPLDDAYSVLENFQRKQVPVGPNHQATIPVWKGRGSEVSVLIGTYDVGGNEEKFMGTSVISMPNSSFYSCNSHKDEEGRTECNFLDQDSIRCVRQHVREARENLMNTLGNEMFINLGFDHMGEEVALKWSEEEEDLFHEVVYTNPATLGRNFWKELSAAFPSRTKKEIVSYYYNVFMLRRRAAQNRSRFLNIDSDDDECPTSNNVGFYGFEVSEEDSAIESPDDQDVHEGNQDNYSDDDGEDDNSYNGTDGGFVGIGRYDKGNGSDSNSQIESLSEPLHQDNETLGISIGSGVQDDSCMSFECQINMDEPCPQYGHDDASPALHASGFKCDQSSLIPGILDFSSGTMERIYFSEPCDAKDWYPGYSTNAASDIDFSPTSKLIEEFLGQVTPDRKNKND 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0686 957 ProSiteProfiles Myb-like domain profile. 687 735 IPR001005 -
Lele56g0686 957 Gene3D - 688 749 - -
Lele56g0686 957 SMART UDPG_MGDP_dh_C_a_2_a 312 426 IPR014027 GO:0016616|GO:0051287
Lele56g0686 957 FunFam UDP-glucose 6-dehydrogenase 225 442 - -
Lele56g0686 957 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 194 288 IPR014026 GO:0016616|GO:0051287
Lele56g0686 957 PIRSF UDPglc_GDPman_dh 1 437 IPR017476 GO:0016616
Lele56g0686 957 SUPERFAMILY Homeodomain-like 687 735 IPR009057 -
Lele56g0686 957 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 418 IPR028356 GO:0003979
Lele56g0686 957 FunFam UDP-glucose 6-dehydrogenase 1 192 - -
Lele56g0686 957 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 184 IPR036291 -
Lele56g0686 957 Gene3D - 225 428 - -
Lele56g0686 957 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 299 418 IPR036220 -
Lele56g0686 957 CDD SANT 687 735 IPR001005 -
Lele56g0686 957 Gene3D - 193 224 - -
Lele56g0686 957 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 10 418 IPR017476 GO:0016616
Lele56g0686 957 PIRSF UDPglc_DH_euk 1 427 IPR028356 GO:0003979
Lele56g0686 957 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 312 418 IPR014027 GO:0016616|GO:0051287
Lele56g0686 957 MobiDBLite consensus disorder prediction 773 833 - -
Lele56g0686 957 Pfam Myb-like DNA-binding domain 687 734 IPR001005 -
Lele56g0686 957 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 170 IPR001732 GO:0016616|GO:0051287
Lele56g0686 957 FunFam UDP-glucose 6-dehydrogenase 193 224 - -
Lele56g0686 957 Gene3D - 1 192 - -
Lele56g0686 957 SMART sant 684 737 IPR001005 -
Lele56g0686 957 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 194 293 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0686 Lele-ChrLele56 5131822 5138077 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele56g0686 UDPG_MGDP_dh_N 5e-55 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0757 53 17546618 17548235 Lele56g0686 56 5131822 5138077 hybridization
Lele54g0747 54 14366683 14372869 Lele56g0686 56 5131822 5138077 hybridization